Metamenu

Effective results for Marinobacter sp. ELB17 (eggnog40)

Summary

Number of putative secreted proteins: 257
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 257 proteins (101 high, 156 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
270374.MELB17_11976(PF00330) (PF00694)(mitochondrial); plastid
270374.MELB17_21375PF00589(mitochondrial); mitochondrial
270374.MELB17_21370PF02899 PF00589(ER)
270374.MELB17_16713(PF00665)mitochondrial
270374.MELB17_22415PF01695mitochondrial
270374.MELB17_12081(PF02028)ER
270374.MELB17_24287PF00589(mitochondrial)
270374.MELB17_15746(PF14279)(mitochondrial); mitochondrial
270374.MELB17_08631(PF14279)(mitochondrial); mitochondrial
270374.MELB17_19866(PF14279)(mitochondrial); mitochondrial
270374.MELB17_14226(PF04862)ER
270374.MELB17_10938(PF00665)(mitochondrial); mitochondrial
270374.MELB17_12191PF01695(mitochondrial)
270374.MELB17_03210(PF02384)(ER)
270374.MELB17_09958(PF02732)(mitochondrial)
270374.MELB17_13901(PF14279)mitochondrial
270374.MELB17_02845PF00589mitochondrial
270374.MELB17_21101PF00589mitochondrial
270374.MELB17_04462(PF02028)ER; mitochondrial
270374.MELB17_17378(PF02028)ER
270374.MELB17_10663PF00589mitochondrial
270374.MELB17_08401(PF02719)mitochondrial
270374.MELB17_10653PF00589(mitochondrial)
270374.MELB17_15302(PF11999)ER
270374.MELB17_06584PF00589mitochondrial
270374.MELB17_11921(PF00694)(mitochondrial)
270374.MELB17_22440(PF00665)mitochondrial
270374.MELB17_12076(PF02028)ER
270374.MELB17_24277PF00589mitochondrial
270374.MELB17_06014(PF00665)mitochondrial
270374.MELB17_05719PF00589(mitochondrial); mitochondrial
270374.MELB17_05714PF00589mitochondrial
270374.MELB17_08471(PF02719)mitochondrial
270374.MELB17_03470PF00589mitochondrial
270374.MELB17_23265(PF04784)ER
270374.MELB17_18289(PF14279)mitochondrial
270374.MELB17_14476PF05735mitochondrial
270374.MELB17_17263(PF12038)(mitochondrial)
270374.MELB17_03480(PF00209)(mitochondrial)
270374.MELB17_19836(PF14279)(mitochondrial); mitochondrial
270374.MELB17_24002(PF00665)mitochondrial
270374.MELB17_17073PF00589(mitochondrial)
270374.MELB17_02720(PF06241)mitochondrial
270374.MELB17_20846PF02899 PF00589
270374.MELB17_00345(PF13495) PF00589
270374.MELB17_14486(PF00330) (PF00694)
270374.MELB17_13587(PF13495) PF00589
270374.MELB17_05699(PF03050)(mitochondrial); not used
270374.MELB17_10268(PF13495) PF00589
270374.MELB17_22345(PF13565) (PF00665)
270374.MELB17_11083(PF13495) PF00589
270374.MELB17_12201(PF00330) (PF00694)
270374.MELB17_00915(PF13495) PF00589
270374.MELB17_05659(PF13495) PF00589
270374.MELB17_10908PF02899 PF00589
270374.MELB17_02840PF02899 PF00589
270374.MELB17_05539(PF13565) (PF00665)
270374.MELB17_10683PF02899 PF00589
270374.MELB17_08561(PF02719)plastid
270374.MELB17_21106PF02899 PF00589
270374.MELB17_01315PF02899 PF00589
270374.MELB17_00575PF00589(ER)
270374.MELB17_08346(PF00665)(mitochondrial)
270374.MELB17_24237PF02899 PF00589
270374.MELB17_24202(PF04851) (PF02384)
270374.MELB17_06579PF02899 PF00589
270374.MELB17_10658PF02899 PF00589
270374.MELB17_05729PF02899 PF00589
270374.MELB17_16978(PF13565) (PF00665)
270374.MELB17_10643PF02899 PF00589
270374.MELB17_12917(PF00330) (PF00694)
270374.MELB17_05734PF00589ER
270374.MELB17_11008(PF13565) (PF00665)
270374.MELB17_05704PF00589(mitochondrial)
270374.MELB17_22535(PF03050)(ER)
270374.MELB17_01135(PF13495) PF00589
270374.MELB17_18434PF02899 PF00589
270374.MELB17_21340PF02899 PF00589
270374.MELB17_03475PF02899 PF00589
270374.MELB17_24247PF02899 PF00589
270374.MELB17_22425PF02899 PF00589
270374.MELB17_21350PF02899 PF00589
270374.MELB17_21515(PF00209)(plastid)
270374.MELB17_10968(PF13495) PF00589
270374.MELB17_02020(PF00330) (PF00694)
270374.MELB17_05394PF02899 PF00589
270374.MELB17_22435PF02899 PF00589
270374.MELB17_22395(PF04851)
270374.MELB17_21170(PF00665)
270374.MELB17_21575(PF00850)
270374.MELB17_16243(PF16565)
270374.MELB17_16718PF01695
270374.MELB17_09528(PF08719)
270374.MELB17_10928PF01695not used
270374.MELB17_23095PF03133
270374.MELB17_22410(PF02384)
270374.MELB17_09328(PF08843)
270374.MELB17_01270PF01695
270374.MELB17_22560PF00589
270374.MELB17_17709PF01695
270374.MELB17_04022PF01695
270374.MELB17_17704(PF00665)
270374.MELB17_04937(PF00665)
270374.MELB17_20521(PF10013)not used
270374.MELB17_03230PF00589
270374.MELB17_09538(PF08843)
270374.MELB17_24282PF02899
270374.MELB17_13027(PF10609)
270374.MELB17_03160PF01695
270374.MELB17_18809(PF09994)
270374.MELB17_14838(PF13565)
270374.MELB17_01265(PF00665)
270374.MELB17_22350PF01695
270374.MELB17_19996(PF04784)
270374.MELB17_04812(PF02028)
270374.MELB17_21151(PF02384)
270374.MELB17_16648(PF03050)
270374.MELB17_17113(PF13565)
270374.MELB17_08301(PF02719)
270374.MELB17_24292(PF03050)
270374.MELB17_17333(PF02696)
270374.MELB17_23982PF01695
270374.MELB17_02080(PF00850)
270374.MELB17_14738(PF14279)
270374.MELB17_08496(PF02719)
270374.MELB17_15197(PF03050)
270374.MELB17_09048(PF02384)
270374.MELB17_01320PF00589
270374.MELB17_01325PF00589
270374.MELB17_16188(PF00850)
270374.MELB17_13137(PF00665)
270374.MELB17_03962(PF04851)
270374.MELB17_10848PF01695not used
270374.MELB17_23992PF01695
270374.MELB17_10693PF02899
270374.MELB17_10698PF00589
270374.MELB17_05307(PF00330)
270374.MELB17_09318(PF08719)
270374.MELB17_12691(PF04851)
270374.MELB17_22335(PF00665)
270374.MELB17_21131(PF04851)
270374.MELB17_10903PF00589
270374.MELB17_17624(PF04851)
270374.MELB17_04017(PF00665)
270374.MELB17_13017(PF02696)
270374.MELB17_03155(PF09588)
270374.MELB17_14026(PF00330)
270374.MELB17_14021(PF00694)
270374.MELB17_14596(PF04278)
270374.MELB17_10688PF00589
270374.MELB17_05312(PF00694)
270374.MELB17_13462(PF01786)
270374.MELB17_22030(PF09994)
270374.MELB17_16308(PF09588)
270374.MELB17_17123PF01695
270374.MELB17_17544(PF00665)
270374.MELB17_24172(PF08843)
270374.MELB17_06139(PF00665)
270374.MELB17_22610(PF04851)
270374.MELB17_02850PF00589
270374.MELB17_10678(PF03050)
270374.MELB17_10673(PF03050)
270374.MELB17_13477(PF00665)
270374.MELB17_09373(PF04851)
270374.MELB17_10253(PF00665)
270374.MELB17_22640(PF02384)
270374.MELB17_01310(PF00665)
270374.MELB17_00570(PF00665)
270374.MELB17_09583(PF04851)
270374.MELB17_21335(PF03050)
270374.MELB17_10893PF02899
270374.MELB17_03080(PF10609)
270374.MELB17_24232PF01695
270374.MELB17_05809(PF04851)
270374.MELB17_10668PF00589
270374.MELB17_08501(PF02719)
270374.MELB17_10248PF01695
270374.MELB17_01365(PF08719)
270374.MELB17_00560PF02899
270374.MELB17_00565PF01695
270374.MELB17_08756(PF00330)
270374.MELB17_21096PF00589
270374.MELB17_03185(PF08843)
270374.MELB17_13457(PF01786)
270374.MELB17_05724PF02899
270374.MELB17_05127(PF11999)
270374.MELB17_01370(PF00850)
270374.MELB17_04057(PF04851)
270374.MELB17_04052(PF02384)
270374.MELB17_22515(PF00665)
270374.MELB17_00220(PF00665)
270374.MELB17_03992(PF02384)
270374.MELB17_06589PF00589
270374.MELB17_24212PF00589
270374.MELB17_03195(PF04851)
270374.MELB17_10648(PF03050)
270374.MELB17_15202(PF03050)
270374.MELB17_23997(PF00665)
270374.MELB17_08526(PF02719)
270374.MELB17_22470PF00589
270374.MELB17_04932PF01695
270374.MELB17_05132(PF00209)
270374.MELB17_04087PF00589
270374.MELB17_22850(PF00209)
270374.MELB17_00720(PF00665)
270374.MELB17_16588(PF13565)
270374.MELB17_17503(PF02028)
270374.MELB17_10633PF02899
270374.MELB17_10638PF00589
270374.MELB17_05709PF02899
270374.MELB17_22445(PF02384)
270374.MELB17_14853(PF00958)
270374.MELB17_03165(PF00665)
270374.MELB17_20571(PF03050)
270374.MELB17_04947(PF08843)
270374.MELB17_06019PF01695
270374.MELB17_24272PF00589
270374.MELB17_06384(PF02028)
270374.MELB17_07389(PF09994)
270374.MELB17_10623(PF03050)
270374.MELB17_10628PF00589
270374.MELB17_15469(PF04851)
270374.MELB17_09623(PF08843)
270374.MELB17_21345PF00589
270374.MELB17_15871(PF10609)
270374.MELB17_00250PF12449
270374.MELB17_03015(PF02028)
270374.MELB17_24242PF00589
270374.MELB17_05389PF00589
270374.MELB17_05384PF00589
270374.MELB17_10768(PF00209)
270374.MELB17_08441(PF02719)
270374.MELB17_10388(PF00850)
270374.MELB17_09093(PF09588)
270374.MELB17_21355(PF03050)
270374.MELB17_14833(PF00665)
270374.MELB17_00265(PF02384)
270374.MELB17_00285(PF04851)
270374.MELB17_06149PF01695
270374.MELB17_03465PF00589
270374.MELB17_13147PF01695
270374.MELB17_24252(PF03050)
270374.MELB17_03390(PF04851)
270374.MELB17_05559(PF00665)
270374.MELB17_05779(PF02384)
270374.MELB17_05774(PF04851)
270374.MELB17_22430PF00589
270374.MELB17_14868(PF00958)
270374.MELB17_05379(PF00665)
270374.MELB17_10393(PF00850)
270374.MELB17_10973PF00589not used
270374.MELB17_21380PF00589
270374.MELB17_10878PF01695
270374.MELB17_12896PF00589not used
270374.MELB17_10703(PF03050)
270374.MELB17_05564PF01695
270374.MELB17_12962(PF02696)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================