Metamenu

Effective results for Symbiobacterium thermophilum IAM 14863 (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 99 proteins (27 high, 72 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
292459.STH3048(PF00163)mitochondrial
292459.STH1132(PF01695)ER; (ER)
292459.STH53(PF01695)mitochondrial; (mitochondrial)
292459.STH1725(PF01609)mitochondrial
292459.STH2702(PF01695)(mitochondrial)
292459.STH1388(PF04143)ER
292459.STH3132(PF04143)ER
292459.STH2297(PF04143)ER
292459.STH2296(PF04143)mitochondrial
292459.STH2968(PF13361)ER
292459.STH113(PF00163)mitochondrial
292459.STH2222(PF04143)ER
292459.STH2221(PF04143)ER
292459.STH107(PF04143)ER
292459.STH1307(PF13361)mitochondrial; (mitochondrial)
292459.STH273(PF01695)(mitochondrial)
292459.STH1765(PF00076)(ER)
292459.STH670(PF05598) (PF01609)
292459.STH3330(PF05598) (PF01609)
292459.STH3192(PF02971) (PF07837)
292459.STH2706(PF05598) (PF01609)
292459.STH2347(PF14330)(mitochondrial)
292459.STH2086(PF05598) (PF01609)
292459.STH2084(PF05598) (PF01609)
292459.STH811(PF05598) (PF01609)
292459.STH315(PF05598) (PF01609)
292459.STH662(PF01609)plastid
292459.STH2262(PF01609)
292459.STH2267(PF01609)
292459.STH2698(PF01695)
292459.STH2057PF00078
292459.STH2586(PF05598)
292459.STH692(PF02873)
292459.STH2908(PF01609)
292459.STH3181(PF05598)
292459.STH2275(PF05598)
292459.STH2278(PF01609)
292459.STH1194(PF05598)
292459.STH984PF00078
292459.STH2242(PF01609)
292459.STH1299(PF01695)
292459.STH1346PF00078
292459.STH1124PF00078
292459.STH2496(PF13361)
292459.STH45(PF01695)
292459.STH1755PF00078
292459.STH1131(PF01695)
292459.STH1136(PF01609)
292459.STH880PF00078
292459.STH2826(PF13361)
292459.STH2014PF00078
292459.STH1727(PF00633)
292459.STH2703(PF01695)
292459.STH894PF00078
292459.STH20PF00078
292459.STH3127(PF00633)
292459.STH3121PF00078
292459.STH3260(PF01695)
292459.STH2732PF00078
292459.STH2280PF00078
292459.STH2287(PF01695)
292459.STH1671PF00078
292459.STH594(PF10974)
292459.STH596(PF10974)
292459.STH591(PF01609)
292459.STH3027(PF00079)
292459.STH3026(PF00079)
292459.STH440(PF01609)
292459.STH15(PF00633)
292459.STH3110PF00078
292459.STH1980PF00078
292459.STH1271(PF00076)
292459.STH615PF12873
292459.STH611(PF13361)
292459.STH769(PF05598)
292459.STH2174(PF13361)
292459.STH2173(PF13361)
292459.STH2559PF00078
292459.STH2726PF00078
292459.STH2953PF00078
292459.STH3171(PF00076)
292459.STH1211(PF02873)
292459.STH744PF00078
292459.STH2787(PF00633)
292459.STH2237PF00078
292459.STH2840(PF00076)
292459.STH2245(PF01609)
292459.STH1303(PF13361)
292459.STH1308(PF13361)
292459.STH274(PF01695)
292459.STH2924PF00078
292459.STH3313PF00078
292459.STH2216(PF01609)
292459.STH1009(PF00076)
292459.STH1551PF00078
292459.STH1550PF00078
292459.STH1794PF00078
292459.STH2666(PF00633)
292459.STH847PF00078

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================