Metamenu

Effective results for Psychroflexus torquis ATCC 700755 (eggnog40)

Summary

Number of putative secreted proteins: 173
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 173 proteins (61 high, 112 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
313595.P700755_20349PF13384 PF13592 (PF13358)
313595.P700755_03507(PF03572)ER
313595.P700755_00972PF11999(ER)
313595.P700755_16192PF00332ER
313595.P700755_14916(PF13271)(mitochondrial)
313595.P700755_01112(PF03572)ER
313595.P700755_01337(PF02128)ER
313595.P700755_12042(PF00078)(mitochondrial); mitochondrial
313595.P700755_15326PF13384 PF13592 (PF13358)
313595.P700755_06590(PF02469)ER
313595.P700755_16514(PF03572)ER
313595.P700755_06570(PF03572)ER
313595.P700755_18952PF13384 PF13592 (PF13358)
313595.P700755_09473(PF16313)ER
313595.P700755_06965(PF03572)ER
313595.P700755_06144PF13384 PF13592 (PF13358)
313595.P700755_00307PF13384 PF13592 (PF13358)
313595.P700755_16087PF13384 PF13592 (PF13358)
313595.P700755_09868PF01030ER
313595.P700755_10835(PF02128)ER
313595.P700755_01012PF11999ER
313595.P700755_09873PF13384 PF13592 (PF13358)
313595.P700755_16679PF13384 PF13592 (PF13358)
313595.P700755_18837PF13384 PF13592 (PF13358)
313595.P700755_10153(PF04326)(mitochondrial)
313595.P700755_14015PF13384 PF13592 (PF13358)
313595.P700755_11922PF13384 PF13592 (PF13358)
313595.P700755_16464(PF03572)mitochondrial; (mitochondrial)
313595.P700755_15266PF13384 PF13592 (PF13358)
313595.P700755_19007PF01030ER
313595.P700755_08849(PF03572)ER
313595.P700755_03587(PF02469)ER
313595.P700755_04347(PF03382)ER
313595.P700755_10268(PF03321)mitochondrial
313595.P700755_05087(PF02469)ER
313595.P700755_09558(PF03572)ER
313595.P700755_09608PF00332ER
313595.P700755_15571(PF02469)ER
313595.P700755_17234(PF02469)ER
313595.P700755_09613PF13384 PF13592 (PF13358)
313595.P700755_09096(PF03382)ER
313595.P700755_00362(PF13688)ER
313595.P700755_08399(PF16313)ER
313595.P700755_07602PF11999ER
313595.P700755_00957PF11999ER
313595.P700755_07512PF13384 PF13592 (PF13358)
313595.P700755_01772PF13384 PF13592 (PF13358)
313595.P700755_20179PF13384 PF13592 (PF13358)
313595.P700755_10138PF13384 PF13592
313595.P700755_07377PF13384 PF13592
313595.P700755_00577(PF01609)(mitochondrial)
313595.P700755_15086(PF00139)(ER)
313595.P700755_02072(PF03321)(plastid)
313595.P700755_12987PF13384 PF13592
313595.P700755_16654(PF01541) PF07460
313595.P700755_10393PF13384 PF13592
313595.P700755_01497(PF01541)(mitochondrial)
313595.P700755_12977(PF01609)(mitochondrial)
313595.P700755_11025PF13384 PF13592
313595.P700755_20114(PF01609)(mitochondrial)
313595.P700755_19202(PF01609)(ER)
313595.P700755_07497(PF13271)(ER)
313595.P700755_08956PF13384 PF13592
313595.P700755_06650PF13384 PF13592
313595.P700755_06264PF13384 PF13592
313595.P700755_10785PF13384 PF13592
313595.P700755_07502(PF00078)
313595.P700755_00187(PF00078)
313595.P700755_10133(PF13358)
313595.P700755_14926(PF00078)
313595.P700755_04667(PF00078)
313595.P700755_09006(PF08662)
313595.P700755_07372(PF13358)
313595.P700755_14911(PF04326)
313595.P700755_14580(PF10013)not used
313595.P700755_12047(PF00078)
313595.P700755_16182PF00332
313595.P700755_19182(PF01609)
313595.P700755_16984(PF07766)
313595.P700755_18762(PF01541)
313595.P700755_14921(PF00078)
313595.P700755_02697PF12237
313595.P700755_12982(PF13358)
313595.P700755_12237PF12762
313595.P700755_01557PF12762
313595.P700755_11432PF12762
313595.P700755_15421PF12762
313595.P700755_07422(PF01609)
313595.P700755_18712(PF06071)
313595.P700755_09071PF12762
313595.P700755_09788(PF00078)
313595.P700755_06149(PF01609)
313595.P700755_00647PF12762
313595.P700755_10790(PF13358)
313595.P700755_08784(PF01609)
313595.P700755_07092PF12762
313595.P700755_19967(PF00078)
313595.P700755_05559(PF16313)
313595.P700755_07202PF12762
313595.P700755_18822PF12762
313595.P700755_10388(PF13358)
313595.P700755_12152(PF04326)
313595.P700755_10448(PF01541)
313595.P700755_13895(PF08843)not used
313595.P700755_09206(PF03572)
313595.P700755_08911(PF08843)
313595.P700755_17739(PF00078)
313595.P700755_00242(PF01609)
313595.P700755_06625(PF08695)
313595.P700755_19132(PF08843)
313595.P700755_11030(PF13358)
313595.P700755_19222(PF10504)
313595.P700755_14285(PF04326)
313595.P700755_04362(PF03382)
313595.P700755_13885(PF08843)not used
313595.P700755_08926(PF08843)
313595.P700755_07677PF12762
313595.P700755_10198PF12762
313595.P700755_08936(PF08843)
313595.P700755_13187PF12762
313595.P700755_07487PF12762
313595.P700755_08057PF12762
313595.P700755_04747(PF11074)
313595.P700755_18644(PF06071)
313595.P700755_04342(PF01609)
313595.P700755_08439PF12762
313595.P700755_08042(PF01609)
313595.P700755_08047PF12762
313595.P700755_04352(PF03382)
313595.P700755_04357(PF01609)
313595.P700755_02562(PF08392)
313595.P700755_08429PF12762
313595.P700755_06660PF07492
313595.P700755_19687(PF03321)
313595.P700755_12817(PF01541)
313595.P700755_15171(PF01609)
313595.P700755_04382(PF03382)
313595.P700755_08097PF12762
313595.P700755_04657(PF04326)
313595.P700755_01377(PF01609)
313595.P700755_10980(PF12899)
313595.P700755_02572(PF08491)
313595.P700755_08961(PF13358)
313595.P700755_17219PF12762
313595.P700755_07015(PF13281)
313595.P700755_20259PF12762
313595.P700755_08419(PF13358)
313595.P700755_16499(PF00078)
313595.P700755_16494(PF00078)
313595.P700755_00547(PF01609)
313595.P700755_12792PF12762
313595.P700755_19077(PF01609)
313595.P700755_02922(PF01541)
313595.P700755_04397(PF03382)
313595.P700755_04737(PF01609)
313595.P700755_11872(PF13688)
313595.P700755_13785(PF01609)
313595.P700755_07025(PF01609)not used
313595.P700755_06645(PF13358)
313595.P700755_08404(PF03572)
313595.P700755_17534(PF01609)
313595.P700755_11090(PF02469)
313595.P700755_16177PF00332
313595.P700755_13532PF12762not used
313595.P700755_04098(PF01541)
313595.P700755_04093(PF01541)
313595.P700755_20404(PF00078)
313595.P700755_08184PF12762
313595.P700755_09361(PF01609)
313595.P700755_03863(PF01541)
313595.P700755_13795(PF00078)
313595.P700755_08981(PF13358)
313595.P700755_06259(PF13358)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================