Effective results for Erythrobacter litoralis HTCC2594 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
314225.ELI_14625				(PF13871) (PF13872)	(ER)
314225.ELI_11025				(PF08570)	ER
314225.ELI_09450				(PF04784)	ER
314225.ELI_00575				(PF08570)	ER
314225.ELI_07175				(PF01541)	(mitochondrial)
314225.ELI_06610				(PF06455)	ER
314225.ELI_14035				(PF01541)	(mitochondrial)
314225.ELI_09445				(PF04784)	(plastid)
314225.ELI_00640				(PF13871) (PF13872)
314225.ELI_02505				(PF01541)
314225.ELI_10770				(PF13683)
314225.ELI_00950				(PF11017)
314225.ELI_07260				(PF13683)
314225.ELI_10955				(PF01541)
314225.ELI_05530				(PF05019)
314225.ELI_05225				(PF13759)
314225.ELI_07325				(PF11017)
314225.ELI_03895				(PF01541)
314225.ELI_07885				(PF13683)
314225.ELI_00765				(PF13683)
314225.ELI_14900				(PF13683)
314225.ELI_09105				(PF13683)
314225.ELI_00740				(PF13683)
314225.ELI_07995				(PF01541)
314225.ELI_14755				(PF16565)
314225.ELI_14960				(PF05019)
314225.ELI_05540				(PF05019)
314225.ELI_06040				PF01231
314225.ELI_05635				(PF01541)
314225.ELI_08875				(PF10013)	not used
314225.ELI_01470				(PF13661)
314225.ELI_04020				(PF13872)
314225.ELI_04025				(PF13871)
314225.ELI_14320				(PF02933)
314225.ELI_01465				(PF13759)
314225.ELI_04100				(PF13683)
314225.ELI_10430				(PF01541)
314225.ELI_03135				(PF01541)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================