Effective results for Maritimibacter alkaliphilus HTCC2654 (eggnog40)

Summary

Number of putative secreted proteins: 67
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 67 proteins (4 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
314271.RB2654_16541				(PF05063)	(mitochondrial)
314271.RB2654_12724				(PF00394)	(mitochondrial)
314271.RB2654_17351				(PF03567)	mitochondrial
314271.RB2654_20268				(PF06500)	(ER)
314271.RB2654_21038				(PF03567)	(mitochondrial); mitochondrial
314271.RB2654_08172				(PF03567)	mitochondrial
314271.RB2654_09544				(PF00394)	mitochondrial
314271.RB2654_21788				(PF01847)	ER
314271.RB2654_05105				(PF11977)	ER
314271.RB2654_18403				(PF02475)	(mitochondrial)
314271.RB2654_13274				(PF13704)	mitochondrial
314271.RB2654_22888				(PF13871) (PF13872)
314271.RB2654_00665				(PF13871) (PF13872)
314271.RB2654_19963				(PF02900)	(plastid)
314271.RB2654_22593				(PF13871) (PF13872)
314271.RB2654_22223				(PF00394)	(ER)
314271.RB2654_05075				(PF13704)	(mitochondrial)
314271.RB2654_18418				(PF01070)	(mitochondrial)
314271.RB2654_13269				(PF02485)	plastid
314271.RB2654_00090				(PF01070)
314271.RB2654_00380				(PF01070)
314271.RB2654_00385				(PF01070)
314271.RB2654_22713				(PF01610)
314271.RB2654_10413				(PF02485)
314271.RB2654_10418				(PF03567)
314271.RB2654_02824				(PF06500)
314271.RB2654_05085				(PF13704)
314271.RB2654_08607				PF11781
314271.RB2654_18298				(PF03567)
314271.RB2654_19908				(PF09458)
314271.RB2654_01080				(PF06119)
314271.RB2654_20953				(PF02900)
314271.RB2654_00025				(PF01610)
314271.RB2654_06182				(PF01070)
314271.RB2654_04914				PF04824
314271.RB2654_21018				(PF02900)
314271.RB2654_02814				(PF02900)
314271.RB2654_17341				(PF03567)
314271.RB2654_03369				(PF13704)
314271.RB2654_09474				(PF01070)
314271.RB2654_00130				(PF02749)
314271.RB2654_12814				(PF00394)
314271.RB2654_06132				(PF01070)
314271.RB2654_19058				PF05631
314271.RB2654_12949				(PF14234)
314271.RB2654_00200				(PF01610)
314271.RB2654_10818				(PF05063)
314271.RB2654_22128				(PF01610)
314271.RB2654_10483				(PF03567)
314271.RB2654_00170				(PF01610)
314271.RB2654_18208				(PF02130)
314271.RB2654_00165				(PF01610)
314271.RB2654_00230				(PF01610)
314271.RB2654_00435				(PF02749)
314271.RB2654_16691				(PF02900)
314271.RB2654_22268				(PF00394)
314271.RB2654_05065				(PF13704)
314271.RB2654_23273				(PF02900)
314271.RB2654_06022				(PF14234)
314271.RB2654_13314				PF10712
314271.RB2654_17321				(PF13704)
314271.RB2654_17326				(PF13704)
314271.RB2654_00730				(PF01610)
314271.RB2654_17171				(PF02749)
314271.RB2654_19338				(PF01070)
314271.RB2654_05425				(PF02130)
314271.RB2654_09134				(PF16155)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================