Metamenu

Effective results for Lactobacillus sakei subsp. sakei 23K (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314315.LSA1624(PF06736)ER
314315.LSA1833(PF06736)(ER)
314315.LSA0584(PF03577)(mitochondrial)
314315.LSA1847(PF06736)ER
314315.LSA0090(PF05935)ER
314315.LSA1820(PF00139)ER
314315.LSA1578(PF05704)(plastid)
314315.LSA1510_f(PF01501)
314315.LSA1688(PF03051)
314315.LSA0162(PF01501)
314315.LSA0179(PF03577)
314315.LSA0786(PF01969)
314315.LSA0787(PF01969)
314315.LSA0897(PF03577)
314315.LSA0091(PF05935)
314315.LSA1686(PF03051)
314315.LSA1687(PF03051)not used
314315.LSA0320(PF03577)
314315.LSA0508(PF05014)
314315.LSA1474(PF01501)
314315.LSA0196(PF03577)
314315.LSA1481(PF05014)
314315.LSA1168(PF05014)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================