Effective results for Xanthomonas campestris pv. campestris str. 8004 (eggnog40)

Summary

Number of putative secreted proteins: 699
- Predicted by EffectiveT3: 197 (high confidence), 297 (low confidence)
- Predicted by EffectiveCCBD: 7 within, 9 before, 28 behind expected region 25..70aa
- Predicted by T4SEpre: 63
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 129 proteins (56 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
314565.XC_0698				PF13683 (PF13276)	(mitochondrial)
314565.XC_3742				(PF05649) (PF01431)	ER
314565.XC_2626				PF13683 (PF13276)	mitochondrial
314565.XC_1542				(PF05649) (PF01431)	ER
314565.XC_1543				(PF05649) (PF01431)	ER
314565.XC_0413				PF13683 (PF13276)	(mitochondrial)
314565.XC_2148				(PF05649) (PF01431)	ER
314565.XC_1406				(PF05649) (PF01431)	ER
314565.XC_3914				PF13683 (PF13276)	(mitochondrial)
314565.XC_0927				PF13683 (PF13276)	(mitochondrial)
314565.XC_1025				PF13683 (PF13276)	(mitochondrial)
314565.XC_3672				PF13683 (PF13276)	mitochondrial
314565.XC_0007			+	(PF09295)	ER
314565.XC_3560		(<)			ER
314565.XC_2642	+				(mitochondrial)
314565.XC_4140	+				(ER)
314565.XC_3063	+				(mitochondrial); (plastid)
314565.XC_2798		+			ER
314565.XC_0784				(PF01670)	ER
314565.XC_1784		(>)			ER
314565.XC_2783				PF13683 (PF13276)	(plastid)
314565.XC_2786			+		mitochondrial
314565.XC_1823		(>)			ER
314565.XC_0681				(PF13276)	mitochondrial; (mitochondrial)
314565.XC_1498			+		ER
314565.XC_0652				(PF08212)	ER
314565.XC_1801			+		ER
314565.XC_0049				(PF08975)	(ER)
314565.XC_3403				(PF08332)	ER
314565.XC_0442				(PF07653)	(mitochondrial); mitochondrial
314565.XC_4215				(PF08212)	ER
314565.XC_1122		(>)			ER
314565.XC_0454	+				mitochondrial; (mitochondrial)
314565.XC_2372	+				(mitochondrial)
314565.XC_3345	+				(mitochondrial)
314565.XC_2563	(+)		+		(mitochondrial)
314565.XC_0236			+		mitochondrial
314565.XC_0858				PF13683 (PF13276)	(plastid)
314565.XC_0736	+				(ER)
314565.XC_2564			+		ER
314565.XC_0880			+		mitochondrial; (mitochondrial)
314565.XC_3996		(<)			ER
314565.XC_1850			+		ER
314565.XC_2394				PF13683 (PF13276)	plastid
314565.XC_2559		(>)			(ER); (mitochondrial)
314565.XC_0942	+				(mitochondrial)
314565.XC_2011	(+)			PF13683 (PF13276)	(plastid)
314565.XC_1707				(PF00930)	(ER)
314565.XC_0546				PF13683 (PF13276)	(plastid)
314565.XC_3706	+				(mitochondrial); plastid
314565.XC_0971				(PF08332)	ER
314565.XC_3956				(PF01163)	mitochondrial
314565.XC_1715				(PF00930)	mitochondrial
314565.XC_1740	+				mitochondrial; (plastid)
314565.XC_1167				(PF10142)	ER
314565.XC_2623				PF13683 (PF13276)	plastid
314565.XC_1981	+				(mitochondrial)
314565.XC_1028		(<)			ER
314565.XC_3920				(PF13276)	mitochondrial; (mitochondrial)
314565.XC_2407			+		ER
314565.XC_2046	+				ER; (ER)
314565.XC_1416	+				(mitochondrial); plastid
314565.XC_2603				PF13683 (PF13276)	(plastid)
314565.XC_4105				(PF00930)	ER
314565.XC_4299			+		ER
314565.XC_3128	+				(ER); (plastid)
314565.XC_0611				(PF00930)	ER
314565.XC_0347			+		ER
314565.XC_3365			+		(ER)
314565.XC_0893			+		ER
314565.XC_4249		(>)			ER
314565.XC_0628	+				(mitochondrial)
314565.XC_4104	+				(mitochondrial); (plastid)
314565.XC_2549			+		mitochondrial
314565.XC_2241		(>)			ER
314565.XC_4051				(PF00930)	ER
314565.XC_4050	+			(PF08695)	(plastid)
314565.XC_1212				(PF13276)	mitochondrial; (mitochondrial)
314565.XC_3018	+				mitochondrial
314565.XC_1321		(>)			ER
314565.XC_3100			+		ER
314565.XC_2013			+		(ER)
314565.XC_2689			+		(ER)
314565.XC_3215			+		(mitochondrial)
314565.XC_3217		(>)			mitochondrial
314565.XC_3695		+			ER
314565.XC_1682				(PF08212)	ER
314565.XC_2244	+				(mitochondrial); plastid
314565.XC_2245	+	(>)			plastid
314565.XC_3840	+		+		(plastid)
314565.XC_1236	+				(ER); (plastid)
314565.XC_2258	+				plastid
314565.XC_3307			+		(mitochondrial)
314565.XC_1535	(+)				(ER); plastid
314565.XC_2784				PF05598 PF01609
314565.XC_3657	(+)				ER
314565.XC_2224	(+)				mitochondrial
314565.XC_1641				PF05598 PF01609
314565.XC_1643				PF05598 PF01609
314565.XC_4320	(+)				(mitochondrial)
314565.XC_4303	(+)				(mitochondrial); plastid
314565.XC_1071	(+)				ER; (ER)
314565.XC_2128	(+)				ER; (mitochondrial)
314565.XC_0238	+	(>)
314565.XC_3618	+				(ER)
314565.XC_4198	(+)				ER
314565.XC_3746	(+)				(mitochondrial); (plastid)
314565.XC_1478				PF05598 PF01609
314565.XC_3407	(+)				(mitochondrial)
314565.XC_4212	+				(plastid)
314565.XC_1054				PF05598 PF01609
314565.XC_0536	+				plastid
314565.XC_3960				(PF08212)	(mitochondrial)
314565.XC_0884	(+)				(mitochondrial); (plastid)
314565.XC_2007				PF05598 PF01609
314565.XC_3423		+			mitochondrial; not used
314565.XC_0763	+				(mitochondrial)
314565.XC_3778	+				(plastid)
314565.XC_2557	+	(>)
314565.XC_0847	+				plastid
314565.XC_2012				PF05598 PF01609
314565.XC_3378	(+)				(mitochondrial)
314565.XC_1745		+			(plastid)
314565.XC_2823	+				(plastid)
314565.XC_3239	(+)				(ER)
314565.XC_1624	+		+
314565.XC_3952	(+)				(ER)
314565.XC_2024	(+)				ER
314565.XC_3398			+		(mitochondrial)
314565.XC_3391	(+)				(ER); plastid
314565.XC_1544				(PF05649) (PF01431)
314565.XC_1665	(+)				(mitochondrial)
314565.XC_1095	(+)				(ER); (plastid)
314565.XC_0410				PF05598 PF01609
314565.XC_2622				PF05598 PF01609
314565.XC_0702				PF05598 PF01609
314565.XC_2145	+				plastid
314565.XC_3923				PF05598 PF01609
314565.XC_3924				PF05598 PF01609
314565.XC_3815	(+)	(>)
314565.XC_2779				PF05598 PF01609
314565.XC_4280				PF01609	(mitochondrial)
314565.XC_0772	+				(mitochondrial)
314565.XC_0600	+				plastid
314565.XC_0601			+		(mitochondrial)
314565.XC_3932		(>)			(plastid)
314565.XC_2993				PF05598 PF01609
314565.XC_0590				PF05598 PF01609
314565.XC_0357	+				(plastid)
314565.XC_1341	(+)				ER
314565.XC_3025	+		+
314565.XC_0341	(+)				(mitochondrial)
314565.XC_2292				PF05598 PF01609
314565.XC_1407				PF05598 PF01609
314565.XC_3908				PF05598 PF01609
314565.XC_2986				PF05598 PF01609
314565.XC_2546	+				(ER)
314565.XC_0298	+				(plastid)
314565.XC_0297	+				(mitochondrial)
314565.XC_2873	(+)				mitochondrial
314565.XC_4139	(+)				mitochondrial; plastid
314565.XC_1712	+				(ER)
314565.XC_2086				(PF13086)	(ER)
314565.XC_0021	(+)				(mitochondrial)
314565.XC_1213	+			(PF02902)
314565.XC_0242	+				(plastid)
314565.XC_3041			+		(ER)
314565.XC_1709	+				(plastid)
314565.XC_3105				PF05598 PF01609
314565.XC_3698				PF05598 PF01609
314565.XC_0251	+		+
314565.XC_3679		(<)	+
314565.XC_0642	(+)				ER
314565.XC_2416	(+)				mitochondrial; (mitochondrial)
314565.XC_0486	+				(plastid)
314565.XC_0797	(+)				(mitochondrial)
314565.XC_2243	+				mitochondrial
314565.XC_2246	+				plastid
314565.XC_0869				PF05598 PF01609
314565.XC_0137				PF05598 PF01609
314565.XC_0133				PF05598 PF01609
314565.XC_1524				PF05598 PF01609
314565.XC_3985	+		+
314565.XC_0005	+				plastid
314565.XC_2643	+
314565.XC_2648	+
314565.XC_1019			+
314565.XC_2790				PF01609
314565.XC_3664	+
314565.XC_3663		(>)
314565.XC_2420	+
314565.XC_2423	(+)			(PF13086)
314565.XC_1832	+
314565.XC_2335	+
314565.XC_0783	(+)			(PF01670)
314565.XC_0788	(+)				(mitochondrial)
314565.XC_1780	+
314565.XC_2251	(+)				(mitochondrial)
314565.XC_3304	+
314565.XC_3891	+
314565.XC_0004	+
314565.XC_1316	(+)				(plastid)
314565.XC_3789	+
314565.XC_3784	+
314565.XC_2787		(>)
314565.XC_0665				(PF13276)
314565.XC_0666				(PF01527)
314565.XC_2432	+
314565.XC_2431	+
314565.XC_2430	+
314565.XC_0859				(PF01527)
314565.XC_3313	+
314565.XC_0688				PF01609
314565.XC_0682	+
314565.XC_0680				(PF01527)
314565.XC_2134				PF01609
314565.XC_2135	+
314565.XC_1640				PF13683	not used
314565.XC_1251	+
314565.XC_1255	(+)				(plastid)
314565.XC_3798	+
314565.XC_2288			+
314565.XC_0208	+
314565.XC_1074	(+)				(ER)
314565.XC_3080	(+)			(PF07720)
314565.XC_3647	+
314565.XC_2422		(<)
314565.XC_3803				(PF01527)
314565.XC_2239	+
314565.XC_2233		(>)
314565.XC_2237	+
314565.XC_0697				(PF01527)
314565.XC_1329	+
314565.XC_1240	+
314565.XC_4202				(PF10013)	not used
314565.XC_0504	+
314565.XC_0240	+
314565.XC_0241	+
314565.XC_0447	+
314565.XC_1802		+
314565.XC_1669	+
314565.XC_3554	(+)				(plastid)
314565.XC_2976	(+)				(ER)
314565.XC_3152			+
314565.XC_0195		(>)
314565.XC_4185			+
314565.XC_2596				(PF13086)
314565.XC_2597				(PF01527)
314565.XC_2590				PF01609
314565.XC_2593				(PF01527)
314565.XC_2598				(PF13276)
314565.XC_3623				(PF01527)
314565.XC_3622				(PF01527)	not used
314565.XC_3624				PF13683
314565.XC_3754			+
314565.XC_1873	(+)			(PF04768)
314565.XC_1870	+
314565.XC_1874	(+)				(mitochondrial)
314565.XC_2214	+
314565.XC_3180			+
314565.XC_3182			+
314565.XC_3183		(<)
314565.XC_2109	(+)				mitochondrial; not used
314565.XC_3967	+
314565.XC_1723	+
314565.XC_1264	+
314565.XC_1461				PF17067
314565.XC_3433	+
314565.XC_0189	+
314565.XC_1592		(>)
314565.XC_1594	+
314565.XC_2583	(+)				(plastid)
314565.XC_2746	+
314565.XC_1137	+
314565.XC_1861			+
314565.XC_3995				PF01609
314565.XC_3282		(<)
314565.XC_0956	+
314565.XC_3970	+
314565.XC_2004	+
314565.XC_1604		(<)
314565.XC_1606	(+)				(plastid)
314565.XC_2826	(+)				plastid
314565.XC_2952	+
314565.XC_4233				(PF13276)
314565.XC_4232				(PF01527)
314565.XC_4313		(>)
314565.XC_1904			+
314565.XC_0951	+
314565.XC_3608			+
314565.XC_0556	+
314565.XC_1146	(+)				(mitochondrial)
314565.XC_3777	+
314565.XC_3775	+				not used
314565.XC_3772		+			not used
314565.XC_2395				(PF01527)
314565.XC_2392				PF01609
314565.XC_2553	(+)				(ER)
314565.XC_2002			+
314565.XC_0894	+
314565.XC_3164	+
314565.XC_3160	+
314565.XC_2650	+
314565.XC_1639	+
314565.XC_2010				(PF01527)
314565.XC_1449	+
314565.XC_2837	+
314565.XC_0093	+
314565.XC_0545				(PF01527)
314565.XC_1846	+
314565.XC_2380	+
314565.XC_2922	+				not used
314565.XC_0713	(+)				plastid
314565.XC_3010	(+)				plastid
314565.XC_2625				(PF01527)
314565.XC_3177	+
314565.XC_3170	+
314565.XC_3659	+
314565.XC_3951	+
314565.XC_3396	+
314565.XC_1430	+
314565.XC_0248	+
314565.XC_0156	(+)				(ER)
314565.XC_0154	+
314565.XC_1666	+
314565.XC_4253	+
314565.XC_2439	(+)		+
314565.XC_0030	+
314565.XC_1984	+
314565.XC_2719	+
314565.XC_4222	+
314565.XC_0668	(+)		+
314565.XC_1360	+
314565.XC_0412				(PF01527)
314565.XC_2624				(PF01527)
314565.XC_0414	+
314565.XC_2628				PF13683
314565.XC_2629				(PF01527)
314565.XC_2412	+
314565.XC_0701				(PF06414)
314565.XC_2535			+
314565.XC_3002	+
314565.XC_1949	+
314565.XC_2931	+
314565.XC_2442	+
314565.XC_2144	+
314565.XC_0968				PF01609
314565.XC_3921				(PF01527)
314565.XC_3927	+
314565.XC_0386				(PF01163)
314565.XC_0144				PF01609
314565.XC_1394	+
314565.XC_1552	+
314565.XC_1559	(+)				(mitochondrial)
314565.XC_2189	+
314565.XC_4260	(+)				(mitochondrial)
314565.XC_4262	+
314565.XC_4064	+
314565.XC_1080	(+)				(plastid)
314565.XC_0364	(+)				plastid
314565.XC_0778		(>)
314565.XC_3036	+
314565.XC_1958	+
314565.XC_3156	+
314565.XC_0607	+
314565.XC_1886	+
314565.XC_0913		(>)
314565.XC_0846	+
314565.XC_3936	+
314565.XC_1773	+
314565.XC_3804				(PF13276)
314565.XC_3802	+
314565.XC_2199			+
314565.XC_0176	+
314565.XC_0179	+
314565.XC_2999			+
314565.XC_0288		(>)
314565.XC_3557	(+)				(plastid)
314565.XC_4259	(+)				plastid
314565.XC_3484				(PF11539)
314565.XC_0353	+
314565.XC_0356		+
314565.XC_1343	(+)	(>)
314565.XC_2604				(PF01527)
314565.XC_3027	+
314565.XC_0617	+
314565.XC_2418			+
314565.XC_0906				PF01609
314565.XC_0909				PF01609
314565.XC_0344	(+)				(mitochondrial)
314565.XC_2057	+
314565.XC_0837	+
314565.XC_1403	+
314565.XC_2187				(PF06884)
314565.XC_3909	+
314565.XC_0164	+
314565.XC_1570		(>)
314565.XC_0892	+
314565.XC_2878			+
314565.XC_0366	+
314565.XC_2877			+
314565.XC_2876	+
314565.XC_2724	+
314565.XC_2728	+
314565.XC_0345	+				not used
314565.XC_1199			+
314565.XC_0349	+
314565.XC_0348	+
314565.XC_2285		(>)
314565.XC_4138	(+)				(mitochondrial)
314565.XC_2657	+
314565.XC_4132	+
314565.XC_3588	+
314565.XC_0065	+
314565.XC_2281	+
314565.XC_3139	+
314565.XC_3135	+
314565.XC_2470	+
314565.XC_0933	+
314565.XC_1751	+
314565.XC_0802	+
314565.XC_3918				(PF01527)
314565.XC_3917				PF13683
314565.XC_3915				(PF01527)
314565.XC_0112	(+)				(mitochondrial)
314565.XC_0115	+
314565.XC_1501	+
314565.XC_1507			+
314565.XC_1211				(PF01527)
314565.XC_2886	+
314565.XC_0375	(+)				(ER)
314565.XC_1324	+
314565.XC_4123	+
314565.XC_0249	(+)	(>)
314565.XC_1034				(PF01527)
314565.XC_1032				PF13683
314565.XC_3104			+
314565.XC_2400				(PF13086)
314565.XC_2316			+
314565.XC_0926				(PF01527)
314565.XC_0835	+
314565.XC_2079				(PF13455)
314565.XC_4164	(+)				plastid
314565.XC_2275	+
314565.XC_1513	+
314565.XC_1514	(+)				(plastid)
314565.XC_1206			+
314565.XC_1202	+
314565.XC_0321	+
314565.XC_1906	+
314565.XC_3843	+
314565.XC_1905	+
314565.XC_2673		(>)
314565.XC_4157	(+)				(plastid)
314565.XC_4159		(>)
314565.XC_1026				(PF01527)
314565.XC_1023			+
314565.XC_3671				(PF01527)
314565.XC_4038	+
314565.XC_0012	(+)				(mitochondrial)
314565.XC_0645	+
314565.XC_2411				(PF06414)
314565.XC_0481		(<)
314565.XC_1687	+
314565.XC_3204				(PF16387)
314565.XC_3201	+
314565.XC_0793	+
314565.XC_0866	+
314565.XC_2078	+
314565.XC_1234			+
314565.XC_3684	(+)
314565.XC_4246	(+)
314565.XC_4144	(+)
314565.XC_3293	(+)
314565.XC_3856	(+)
314565.XC_3662	(+)
314565.XC_0659	(+)
314565.XC_1788	(+)
314565.XC_1658	(+)
314565.XC_0588	(+)
314565.XC_3070	(+)
314565.XC_2652	(+)
314565.XC_4178	(+)
314565.XC_0278	(+)
314565.XC_1003	(+)
314565.XC_0664	(+)
314565.XC_2324	(+)
314565.XC_1797	(+)
314565.XC_0845	(+)				not used
314565.XC_3881	(+)
314565.XC_3883	(+)
314565.XC_1642	(+)
314565.XC_4012	(+)
314565.XC_4011	(+)
314565.XC_2916	(+)
314565.XC_1499	(+)
314565.XC_2124	(+)
314565.XC_0205	(+)
314565.XC_1070	(+)
314565.XC_0673	(+)
314565.XC_0674	(+)
314565.XC_2355	(+)
314565.XC_2231	(+)
314565.XC_2236	(+)
314565.XC_2902	(+)
314565.XC_1487	(+)
314565.XC_3521	(+)
314565.XC_1062	(+)
314565.XC_1064	(+)
314565.XC_0508	(+)
314565.XC_0500	(+)
314565.XC_3243	(+)
314565.XC_2341	(+)
314565.XC_2343	(+)
314565.XC_3874	(+)
314565.XC_2973	(+)
314565.XC_1473	(+)
314565.XC_0191	(+)
314565.XC_0197	(+)
314565.XC_4216	(+)
314565.XC_1051	(+)
314565.XC_1291	(+)
314565.XC_2591	(+)
314565.XC_1714	(+)
314565.XC_2907	(+)
314565.XC_2216	(+)
314565.XC_3344	(+)
314565.XC_3188	(+)
314565.XC_3522	(+)
314565.XC_1613	(+)
314565.XC_3296	(+)
314565.XC_3968	(+)				not used
314565.XC_3488	(+)
314565.XC_1595	(+)
314565.XC_2256	(+)
314565.XC_3503	(+)
314565.XC_3504	(+)
314565.XC_1044	(+)				not used
314565.XC_2582	(+)
314565.XC_0520	(+)
314565.XC_1134	(+)
314565.XC_3768	(+)
314565.XC_3766	(+)
314565.XC_2924	(+)
314565.XC_2567	(+)
314565.XC_0840	(+)
314565.XC_1383	(+)
314565.XC_3358	(+)
314565.XC_1917	(+)
314565.XC_3196	(+)
314565.XC_3990	(+)
314565.XC_3285	(+)
314565.XC_3973	(+)
314565.XC_2005	(+)
314565.XC_2821	(+)
314565.XC_2825	(+)
314565.XC_3510	(+)
314565.XC_2694	(+)
314565.XC_3471	(+)
314565.XC_3472	(+)
314565.XC_0449	(+)
314565.XC_0554	(+)
314565.XC_2473	(+)
314565.XC_3367	(+)
314565.XC_3167	(+)
314565.XC_3161	(+)
314565.XC_2161	(+)
314565.XC_2162	(+)
314565.XC_0949	(+)
314565.XC_3946	(+)
314565.XC_4171	(+)
314565.XC_1702	(+)
314565.XC_1703	(+)
314565.XC_3380	(+)
314565.XC_0632	(+)
314565.XC_1442	(+)
314565.XC_2426	(+)
314565.XC_2838	(+)
314565.XC_2765	(+)
314565.XC_0542	(+)
314565.XC_2499	(+)
314565.XC_1842	(+)
314565.XC_1848	(+)
314565.XC_2384	(+)
314565.XC_2389	(+)
314565.XC_0417	(+)
314565.XC_1939	(+)
314565.XC_4023	(+)
314565.XC_2822	(+)
314565.XC_2153	(+)
314565.XC_3954	(+)
314565.XC_2988	(+)
314565.XC_3399	(+)
314565.XC_1439	(+)
314565.XC_1540	(+)
314565.XC_1743	(+)
314565.XC_0667	(+)
314565.XC_2716	(+)
314565.XC_1363	(+)
314565.XC_3716	(+)
314565.XC_2532	(+)
314565.XC_3008	(+)
314565.XC_1899	(+)
314565.XC_0967	(+)
314565.XC_1767	(+)
314565.XC_3810	(+)
314565.XC_1391	(+)
314565.XC_1399	+
314565.XC_1553	(+)
314565.XC_2772	(+)
314565.XC_4267	(+)
314565.XC_4066	(+)
314565.XC_2971	(+)
314565.XC_3600	(+)
314565.XC_2700	(+)
314565.XC_2635	(+)
314565.XC_3037	(+)
314565.XC_1953	(+)
314565.XC_3158	(+)
314565.XC_2455	(+)
314565.XC_2454	(+)
314565.XC_0292	(+)
314565.XC_1779	(+)
314565.XC_2286	(+)
314565.XC_0825	(+)
314565.XC_1410	(+)
314565.XC_2800	(+)
314565.XC_1412	(+)
314565.XC_4278	(+)
314565.XC_0286	(+)
314565.XC_4076	(+)
314565.XC_4072	(+)
314565.XC_2868	(+)
314565.XC_2863	(+)
314565.XC_2734	(+)
314565.XC_2039	(+)
314565.XC_0354	(+)
314565.XC_2600	(+)
314565.XC_4294	(+)
314565.XC_0768	(+)
314565.XC_0646	(+)
314565.XC_3028	(+)
314565.XC_0346	(+)
314565.XC_2053	(+)
314565.XC_3833	(+)
314565.XC_1400	(+)
314565.XC_1409	(+)
314565.XC_2186	(+)
314565.XC_3901	(+)
314565.XC_0165	(+)
314565.XC_1578	(+)
314565.XC_2989	(+)
314565.XC_2619	(+)
314565.XC_2726	(+)
314565.XC_1353	(+)
314565.XC_1350	(+)
314565.XC_2919	(+)
314565.XC_4135	(+)
314565.XC_2913	(+)
314565.XC_3138	(+)
314565.XC_0624	(+)
314565.XC_0934	(+)
314565.XC_1634	(+)
314565.XC_1635	(+)
314565.XC_1754	(+)
314565.XC_1995	(+)
314565.XC_1997	(+)
314565.XC_2691	(+)
314565.XC_2248	(+)
314565.XC_3911	(+)
314565.XC_1663	(+)
314565.XC_0113	(+)
314565.XC_3543	(+)
314565.XC_1216	(+)
314565.XC_2880	(+)
314565.XC_1325	(+)
314565.XC_0247	(+)
314565.XC_0064	(+)				not used
314565.XC_0981	(+)
314565.XC_3216	(+)
314565.XC_2371	(+)
314565.XC_2075	(+)
314565.XC_0627	(+)
314565.XC_1173	(+)
314565.XC_2095	(+)
314565.XC_1205	(+)
314565.XC_1207	(+)
314565.XC_2895	(+)
314565.XC_3456	(+)
314565.XC_3459	(+)
314565.XC_4115	(+)
314565.XC_4302	(+)
314565.XC_1686	(+)
314565.XC_3561	(+)
314565.XC_2247	(+)
314565.XC_3846	(+)
314565.XC_2065	(+)
314565.XC_3987	(+)
314565.XC_0823	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.1 (11/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.9 (9/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================