Metamenu

Effective results for Rhodopseudomonas palustris BisB5 (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 96
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316057.RPD_3006+ER
316057.RPD_3556+(mitochondrial)
316057.RPD_2799(PF02931)ER
316057.RPD_0811(PF14295)ER
316057.RPD_3351+ER
316057.RPD_2528+(mitochondrial); mitochondrial
316057.RPD_4364+(ER)
316057.RPD_0055+(mitochondrial)
316057.RPD_2507+ER
316057.RPD_1234(PF00102)(mitochondrial); plastid
316057.RPD_3107+ER
316057.RPD_2969+ER
316057.RPD_3363+ER
316057.RPD_2113+ER
316057.RPD_2030+(mitochondrial)
316057.RPD_1725+ER
316057.RPD_2422+ER
316057.RPD_0153+ER
316057.RPD_2398(PF03209)(ER)
316057.RPD_3746(PF03209)ER
316057.RPD_3444+(mitochondrial)
316057.RPD_1702PF06482mitochondrial
316057.RPD_3521+mitochondrial; (mitochondrial)
316057.RPD_0084+ER
316057.RPD_2989+ER
316057.RPD_3731(PF03209)mitochondrial; (mitochondrial)
316057.RPD_4292+ER
316057.RPD_3795+ER
316057.RPD_3725+ER
316057.RPD_2178+ER
316057.RPD_4055+(mitochondrial); plastid
316057.RPD_4203+(mitochondrial)
316057.RPD_3277+mitochondrial; (mitochondrial)
316057.RPD_4192(PF08022)ER
316057.RPD_4041+(ER)
316057.RPD_3250+mitochondrial
316057.RPD_3785(PF03209)ER
316057.RPD_1197+mitochondrial
316057.RPD_4264+ER
316057.RPD_0316(PF08022)ER
316057.RPD_2402(PF00360) (PF08446)
316057.RPD_2403(PF00360) (PF08446)
316057.RPD_0273(PF13468)(mitochondrial)
316057.RPD_1054(PF00016) (PF02788)
316057.RPD_0462(PF00016) (PF02788)
316057.RPD_0144+(mitochondrial)
316057.RPD_1549(PF00016) (PF02788)
316057.RPD_2377(PF00360) (PF08446)
316057.RPD_3740(PF00360) (PF08446)
316057.RPD_1594+(plastid)
316057.RPD_2730+(mitochondrial)
316057.RPD_3722(PF00016) (PF02788)
316057.RPD_1245(PF02586)(plastid)
316057.RPD_1875+(ER)
316057.RPD_3788(PF00360) (PF08446)
316057.RPD_2463+
316057.RPD_2791+
316057.RPD_2796+
316057.RPD_0818+
316057.RPD_1822+
316057.RPD_4171+
316057.RPD_0279+
316057.RPD_0915+
316057.RPD_1989+
316057.RPD_3369+
316057.RPD_3964+
316057.RPD_0283+
316057.RPD_1641(PF01442)
316057.RPD_2514+
316057.RPD_2284(PF02586)
316057.RPD_2283(PF02586)
316057.RPD_4391+
316057.RPD_1437+
316057.RPD_1949+
316057.RPD_1548(PF00101)
316057.RPD_3161+
316057.RPD_3015+
316057.RPD_1408+
316057.RPD_2578+
316057.RPD_1714+
316057.RPD_2712+
316057.RPD_1147(PF13468)
316057.RPD_2148+
316057.RPD_3635(PF02586)
316057.RPD_3033+
316057.RPD_0770+
316057.RPD_0762+
316057.RPD_1917+
316057.RPD_1821+
316057.RPD_4184+
316057.RPD_2801+
316057.RPD_0531+
316057.RPD_1406+
316057.RPD_3721(PF00101)
316057.RPD_3729+
316057.RPD_2233(PF00016)
316057.RPD_3332+
316057.RPD_0734+
316057.RPD_0733+
316057.RPD_1806(PF13468)
316057.RPD_2821(PF13468)
316057.RPD_3244+
316057.RPD_2101+
316057.RPD_2672+
316057.RPD_3099+
316057.RPD_1487+
316057.RPD_0832+
316057.RPD_0010(PF02586)
316057.RPD_2894+
316057.RPD_4134+
316057.RPD_4154+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================