Metamenu

Effective results for Rhodopseudomonas palustris HaA2 (eggnog40)

Summary

Number of putative secreted proteins: 171
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 100 proteins (2 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316058.RPB_4690(PF13458)ER
316058.RPB_2047(PF13458)mitochondrial
316058.RPB_1556(PF13458)ER
316058.RPB_3620(PF13458)(ER); (mitochondrial)
316058.RPB_2460+ER
316058.RPB_0752(PF13458)ER
316058.RPB_0684+(mitochondrial)
316058.RPB_4446(PF03209)ER
316058.RPB_4040+ER
316058.RPB_3615(PF13458)ER
316058.RPB_2397+(mitochondrial)
316058.RPB_0692(PF13458)ER
316058.RPB_0694(PF12399)ER
316058.RPB_3339(PF13458)ER
316058.RPB_2270(PF13458)ER
316058.RPB_1574(PF13458)ER
316058.RPB_1579(PF13458)mitochondrial
316058.RPB_0513+ER
316058.RPB_3991(PF03209)ER
316058.RPB_3199(PF13458)ER
316058.RPB_2246(PF16184)ER
316058.RPB_2653+ER
316058.RPB_0656(PF12399)(mitochondrial)
316058.RPB_4434(PF13458)ER
316058.RPB_4632(PF12399)ER
316058.RPB_3668+ER
316058.RPB_0401+(ER); ER
316058.RPB_3723+ER
316058.RPB_1385+ER
316058.RPB_3877(PF13458)ER
316058.RPB_3265(PF13458)mitochondrial
316058.RPB_1738(PF13458)(ER)
316058.RPB_1739(PF13458)ER
316058.RPB_4380+ER
316058.RPB_3735(PF01847)ER
316058.RPB_0119(PF00839)ER
316058.RPB_4286+ER
316058.RPB_4614(PF13458)ER
316058.RPB_2754(PF02931)ER
316058.RPB_1663(PF13458)ER
316058.RPB_4297(PF08022)ER
316058.RPB_3566(PF13458)ER
316058.RPB_0126(PF13458)ER
316058.RPB_4630(PF13458)ER
316058.RPB_3685(PF13458)ER
316058.RPB_4103(PF13458)ER; (ER)
316058.RPB_2083(PF12399)ER
316058.RPB_2081(PF13458)ER
316058.RPB_3575(PF13458)ER
316058.RPB_3572(PF12399)ER
316058.RPB_4031(PF03209)mitochondrial; ER
316058.RPB_2316+mitochondrial
316058.RPB_1743+(mitochondrial)
316058.RPB_3783+ER
316058.RPB_0038(PF13458)ER
316058.RPB_1427+mitochondrial
316058.RPB_2942(PF08022)ER
316058.RPB_2234+mitochondrial; (ER)
316058.RPB_3793+(mitochondrial); plastid
316058.RPB_0554(PF13458)ER
316058.RPB_1530PF03385(mitochondrial)
316058.RPB_1152(PF13458)mitochondrial
316058.RPB_3970+ER
316058.RPB_3976(PF03209)mitochondrial; (mitochondrial)
316058.RPB_4662(PF13458)mitochondrial
316058.RPB_0942(PF13458)(ER)
316058.RPB_4684(PF13458)ER
316058.RPB_2450(PF13458)ER
316058.RPB_1333+(mitochondrial)
316058.RPB_3892(PF13458)ER
316058.RPB_3891(PF12399)ER
316058.RPB_4204(PF13458)ER
316058.RPB_1797(PF12399)(ER)
316058.RPB_2129(PF01697)(mitochondrial)
316058.RPB_3985(PF00360) (PF08446)
316058.RPB_4450(PF00360) (PF08446)
316058.RPB_4451(PF00360) (PF08446)
316058.RPB_1113(PF00102)(plastid)
316058.RPB_2814+(mitochondrial)
316058.RPB_1096+(plastid)
316058.RPB_4596(PF14295)(mitochondrial)
316058.RPB_3108(PF01958)(ER)
316058.RPB_2751+(plastid)
316058.RPB_1962+plastid
316058.RPB_4034(PF00360) (PF08446)
316058.RPB_2169(PF00360) (PF08446)
316058.RPB_0141(PF13458)(mitochondrial)
316058.RPB_3964(PF00016) (PF02788)
316058.RPB_0951(PF00016) (PF02788)
316058.RPB_0556(PF13468)(mitochondrial)
316058.RPB_0794+(mitochondrial)
316058.RPB_4276(PF00839)(ER)
316058.RPB_3545+(plastid)
316058.RPB_0300(PF00016) (PF02788)
316058.RPB_4203+(mitochondrial)
316058.RPB_2130+
316058.RPB_2048(PF12399)
316058.RPB_3085(PF13468)
316058.RPB_3323+
316058.RPB_0422(PF13458)
316058.RPB_1561(PF12399)
316058.RPB_3617(PF12399)
316058.RPB_3616(PF12399)
316058.RPB_2676+
316058.RPB_1582(PF12399)
316058.RPB_1802+
316058.RPB_3055+
316058.RPB_2273(PF12399)
316058.RPB_3603+
316058.RPB_1372+
316058.RPB_4426(PF12399)
316058.RPB_2108+
316058.RPB_1744(PF12399)
316058.RPB_1637(PF16184)
316058.RPB_1916+
316058.RPB_2893+
316058.RPB_3389+
316058.RPB_0759+
316058.RPB_1571(PF12399)
316058.RPB_2002+
316058.RPB_2713+
316058.RPB_1821+
316058.RPB_3845(PF01442)
316058.RPB_3650+
316058.RPB_3653(PF13468)
316058.RPB_1429+
316058.RPB_1740(PF13458)
316058.RPB_0285+
316058.RPB_2348+
316058.RPB_2038+
316058.RPB_1255(PF12399)
316058.RPB_3107+
316058.RPB_0914+
316058.RPB_2759(PF13458)
316058.RPB_1405+
316058.RPB_3759+
316058.RPB_1661(PF12399)
316058.RPB_3343+
316058.RPB_0055PF02140
316058.RPB_0456+
316058.RPB_1074+
316058.RPB_3167(PF12399)
316058.RPB_1618+
316058.RPB_3227(PF00016)
316058.RPB_0939(PF13458)
316058.RPB_3593+
316058.RPB_3683(PF12399)
316058.RPB_2172+
316058.RPB_0889+
316058.RPB_2363+
316058.RPB_3487+
316058.RPB_0922(PF13455)
316058.RPB_2318+
316058.RPB_1856+
316058.RPB_2762(PF12399)
316058.RPB_1036(PF13468)
316058.RPB_2785(PF13468)
316058.RPB_4569+
316058.RPB_2439+
316058.RPB_0144(PF12399)
316058.RPB_0147(PF01958)
316058.RPB_4659(PF12399)
316058.RPB_3893+
316058.RPB_0550+
316058.RPB_3974+
316058.RPB_1830+
316058.RPB_4681+
316058.RPB_3419+
316058.RPB_0546+
316058.RPB_3890(PF12399)
316058.RPB_4205(PF12399)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================