Metamenu

Effective results for Thiomicrospira crunogena XCL-2 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 18 proteins (0 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
317025.Tcr_0450(PF03625)ER
317025.Tcr_1986(PF09835)(mitochondrial)
317025.Tcr_0557(PF09835)mitochondrial
317025.Tcr_0949(PF03625)ER
317025.Tcr_0952(PF09731)ER
317025.Tcr_0956(PF09835)(mitochondrial)
317025.Tcr_0838(PF02788) (PF00016)
317025.Tcr_0427(PF00016) (PF02788)
317025.Tcr_0424(PF00016) (PF02788)
317025.Tcr_1139(PF05706)
317025.Tcr_0665(PF00454)
317025.Tcr_1518(PF03162)
317025.Tcr_0839(PF00101)
317025.Tcr_1854(PF03625)
317025.Tcr_1971(PF11969)
317025.Tcr_0428(PF00101)
317025.Tcr_2111(PF03625)
317025.Tcr_2069(PF03625)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================