Effective results for Azotobacter vinelandii DJ (eggnog40)
Summary
Number of putative secreted proteins: 221
- Predicted by T4SEpre: 48
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 180 proteins (7 high, 173 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 322710.Avin_38410 | (PF02887) (PF00224) | (mitochondrial) | |||
| 322710.Avin_00350 | + | ER | |||
| 322710.Avin_49960 | (PF00121) | (ER); (mitochondrial) | |||
| 322710.Avin_21910 | (PF09084) | ER | |||
| 322710.Avin_32320 | (PF13565) | mitochondrial; (mitochondrial) | |||
| 322710.Avin_21640 | (PF09084) | (ER) | |||
| 322710.Avin_08170 | (PF09084) | ER | |||
| 322710.Avin_30580 | (PF01118) | (mitochondrial) | |||
| 322710.Avin_25520 | (PF01609) | (mitochondrial) | |||
| 322710.Avin_31400 | (PF09084) | ER | |||
| 322710.Avin_45770 | (PF00121) | (ER); (mitochondrial) | |||
| 322710.Avin_43890 | (PF08028) | (mitochondrial) | |||
| 322710.Avin_31360 | (PF09084) | ER | |||
| 322710.Avin_21720 | (PF09084) | ER | |||
| 322710.Avin_51840 | (PF00565) | ER | |||
| 322710.Avin_00430 | + | ER | |||
| 322710.Avin_40530 | (PF02371) | (mitochondrial) | |||
| 322710.Avin_28090 | (PF13358) | (ER) | |||
| 322710.Avin_47870 | (PF00565) | ER | |||
| 322710.Avin_32560 | + | ER | |||
| 322710.Avin_15600 | + | ER | |||
| 322710.Avin_43020 | + | ER | |||
| 322710.Avin_31680 | (PF09084) | ER | |||
| 322710.Avin_36640 | + | ER | |||
| 322710.Avin_02750 | (PF00148) | (mitochondrial) | |||
| 322710.Avin_21970 | (PF09084) | ER | |||
| 322710.Avin_41870 | (PF02371) | (mitochondrial) | |||
| 322710.Avin_19010 | (PF00565) | ER | |||
| 322710.Avin_14330 | + | ER | |||
| 322710.Avin_10850 | + | ER | |||
| 322710.Avin_46540 | + | ER | |||
| 322710.Avin_29390 | (PF09084) | ER | |||
| 322710.Avin_22500 | (PF09084) | ER | |||
| 322710.Avin_44550 | (PF09084) | (mitochondrial) | |||
| 322710.Avin_51570 | + | ER | |||
| 322710.Avin_30510 | (PF09084) | ER | |||
| 322710.Avin_31390 | (PF09084) | ER | |||
| 322710.Avin_48780 | (PF02371) | mitochondrial | |||
| 322710.Avin_26600 | + | (ER); ER | |||
| 322710.Avin_31380 | (PF09084) | ER | |||
| 322710.Avin_12104 | + | ER | |||
| 322710.Avin_22420 | (PF09084) | ER | |||
| 322710.Avin_08750 | (PF03928) | (ER); (mitochondrial) | |||
| 322710.Avin_22320 | (PF13518) (PF13683) | ||||
| 322710.Avin_25020 | + | (mitochondrial) | |||
| 322710.Avin_22210 | PF03952 PF00113 | ||||
| 322710.Avin_52040 | + | plastid | |||
| 322710.Avin_00500 | (PF01583) | (mitochondrial) | |||
| 322710.Avin_16180 | (PF01583) | (plastid) | |||
| 322710.Avin_31350 | + | (PF08028) | |||
| 322710.Avin_27550 | + | (plastid) | |||
| 322710.Avin_49990 | (PF02887) (PF00224) | ||||
| 322710.Avin_24694 | (PF01583) | plastid | |||
| 322710.Avin_13810 | (PF08787) | plastid | |||
| 322710.Avin_09100 | (PF13518) (PF13683) | ||||
| 322710.Avin_33550 | (PF13518) (PF13683) | ||||
| 322710.Avin_23430 | + | (mitochondrial) | |||
| 322710.Avin_31560 | (PF13384) | (mitochondrial) | |||
| 322710.Avin_43370 | (PF02887) (PF00224) | ||||
| 322710.Avin_41930 | (PF01609) | (plastid) | |||
| 322710.Avin_38790 | PF03952 PF00113 | ||||
| 322710.Avin_36480 | (PF13384) | (mitochondrial) | |||
| 322710.Avin_27240 | (PF02887) (PF00224) | ||||
| 322710.Avin_45960 | (PF01609) | (ER) | |||
| 322710.Avin_22190 | (PF02887) (PF00224) | ||||
| 322710.Avin_49970 | PF03952 PF00113 | ||||
| 322710.Avin_31100 | (PF08028) | (plastid) | |||
| 322710.Avin_03760 | (PF09084) | (ER) | |||
| 322710.Avin_43350 | PF03952 PF00113 | ||||
| 322710.Avin_09530 | (PF13384) | (mitochondrial) | |||
| 322710.Avin_50600 | (PF13518) (PF13683) | ||||
| 322710.Avin_45760 | PF03952 PF00113 | ||||
| 322710.Avin_27220 | PF03952 PF00113 | ||||
| 322710.Avin_11320 | (PF13518) (PF13683) | ||||
| 322710.Avin_15790 | (PF13518) (PF13683) | ||||
| 322710.Avin_15120 | (PF01118) | (mitochondrial) | |||
| 322710.Avin_38420 | + | (ER) | |||
| 322710.Avin_36420 | (PF13358) (PF13384) | ||||
| 322710.Avin_36130 | (PF13358) | (mitochondrial) | |||
| 322710.Avin_51360 | (PF02887) (PF00224) | ||||
| 322710.Avin_43300 | (PF03928) | (mitochondrial) | |||
| 322710.Avin_01470 | (PF00148) | (plastid) | |||
| 322710.Avin_21030 | (PF13518) (PF13683) | ||||
| 322710.Avin_49630 | (PF13384) | (mitochondrial) | |||
| 322710.Avin_52330 | + | ||||
| 322710.Avin_44660 | (PF02371) | ||||
| 322710.Avin_25480 | (PF13565) | ||||
| 322710.Avin_16430 | (PF05187) | ||||
| 322710.Avin_30220 | (PF13358) | ||||
| 322710.Avin_26840 | (PF01609) | ||||
| 322710.Avin_30820 | (PF03928) | ||||
| 322710.Avin_02590 | (PF00148) | ||||
| 322710.Avin_32180 | (PF08028) | ||||
| 322710.Avin_51250 | (PF12708) | ||||
| 322710.Avin_44670 | (PF13358) | ||||
| 322710.Avin_18110 | + | ||||
| 322710.Avin_33710 | (PF12708) | ||||
| 322710.Avin_37340 | + | ||||
| 322710.Avin_16510 | (PF13565) | ||||
| 322710.Avin_42410 | + | ||||
| 322710.Avin_41760 | + | ||||
| 322710.Avin_49770 | (PF01609) | ||||
| 322710.Avin_27180 | + | ||||
| 322710.Avin_32190 | (PF01609) | ||||
| 322710.Avin_32330 | (PF13358) | ||||
| 322710.Avin_18270 | (PF01609) | ||||
| 322710.Avin_46720 | (PF03928) | ||||
| 322710.Avin_44390 | (PF10685) | ||||
| 322710.Avin_24400 | + | ||||
| 322710.Avin_13540 | (PF13358) | ||||
| 322710.Avin_09560 | (PF02371) | ||||
| 322710.Avin_17150 | (PF13358) | ||||
| 322710.Avin_49710 | (PF13565) | ||||
| 322710.Avin_46040 | (PF01118) | ||||
| 322710.Avin_30780 | (PF13565) | ||||
| 322710.Avin_34250 | (PF01118) | ||||
| 322710.Avin_18390 | (PF02371) | ||||
| 322710.Avin_21940 | + | ||||
| 322710.Avin_51190 | (PF12708) | ||||
| 322710.Avin_20700 | (PF13565) | ||||
| 322710.Avin_51200 | (PF12708) | ||||
| 322710.Avin_45800 | (PF13358) | ||||
| 322710.Avin_23960 | (PF08787) | ||||
| 322710.Avin_08950 | (PF00565) | ||||
| 322710.Avin_34240 | (PF01118) | ||||
| 322710.Avin_49030 | (PF01106) | ||||
| 322710.Avin_02790 | (PF01106) | ||||
| 322710.Avin_13600 | (PF13565) | ||||
| 322710.Avin_02770 | (PF00148) | ||||
| 322710.Avin_40190 | + | ||||
| 322710.Avin_51180 | (PF12708) | ||||
| 322710.Avin_08220 | (PF05935) | ||||
| 322710.Avin_13510 | (PF13565) | ||||
| 322710.Avin_33560 | (PF13358) | ||||
| 322710.Avin_08130 | (PF09084) | ||||
| 322710.Avin_09760 | (PF02371) | ||||
| 322710.Avin_48990 | (PF00148) | ||||
| 322710.Avin_43180 | + | ||||
| 322710.Avin_42740 | (PF00342) | ||||
| 322710.Avin_41580 | (PF13565) | ||||
| 322710.Avin_02300 | (PF10685) | ||||
| 322710.Avin_08230 | (PF05935) | ||||
| 322710.Avin_06680 | + | ||||
| 322710.Avin_44510 | (PF08028) | ||||
| 322710.Avin_09550 | (PF13358) | ||||
| 322710.Avin_25130 | (PF13358) | ||||
| 322710.Avin_24710 | (PF01609) | ||||
| 322710.Avin_15160 | (PF05187) | ||||
| 322710.Avin_41850 | (PF01609) | ||||
| 322710.Avin_24660 | (PF01609) | ||||
| 322710.Avin_12240 | (PF01609) | ||||
| 322710.Avin_11130 | (PF10685) | ||||
| 322710.Avin_03540 | + | ||||
| 322710.Avin_42130 | (PF01118) | ||||
| 322710.Avin_31110 | (PF09084) | ||||
| 322710.Avin_35590 | (PF02371) | ||||
| 322710.Avin_51230 | (PF12708) | ||||
| 322710.Avin_13570 | (PF13358) | ||||
| 322710.Avin_01400 | (PF00148) | ||||
| 322710.Avin_33340 | (PF01609) | ||||
| 322710.Avin_49910 | (PF00121) | ||||
| 322710.Avin_21570 | (PF08028) | ||||
| 322710.Avin_01620 | (PF01106) | ||||
| 322710.Avin_31320 | (PF01609) | ||||
| 322710.Avin_17400 | (PF05187) | ||||
| 322710.Avin_36450 | (PF01609) | ||||
| 322710.Avin_13560 | (PF02371) | ||||
| 322710.Avin_21760 | (PF13358) | ||||
| 322710.Avin_51170 | (PF12708) | ||||
| 322710.Avin_11020 | (PF00477) | not used | |||
| 322710.Avin_44370 | PF09139 | ||||
| 322710.Avin_32100 | (PF01609) | ||||
| 322710.Avin_28760 | (PF01106) | ||||
| 322710.Avin_31480 | (PF08028) | ||||
| 322710.Avin_05610 | (PF03928) | ||||
| 322710.Avin_23930 | (PF13358) | ||||
| 322710.Avin_24580 | (PF13565) | ||||
| 322710.Avin_30290 | + | ||||
| 322710.Avin_38180 | + | ||||
| 322710.Avin_12690 | + | ||||
| 322710.Avin_39870 | (PF00148) | ||||
| 322710.Avin_31490 | (PF08028) | ||||
| 322710.Avin_14300 | (PF02371) | ||||
| 322710.Avin_45790 | (PF02371) | ||||
| 322710.Avin_09600 | (PF01609) | ||||
| 322710.Avin_08700 | (PF01118) | ||||
| 322710.Avin_01700 | + | ||||
| 322710.Avin_49280 | + | ||||
| 322710.Avin_43800 | (PF08028) | ||||
| 322710.Avin_47760 | + | ||||
| 322710.Avin_17650 | (PF00342) | ||||
| 322710.Avin_31810 | (PF08787) | ||||
| 322710.Avin_12570 | + | ||||
| 322710.Avin_15060 | (PF08028) | ||||
| 322710.Avin_11010 | (PF00477) | ||||
| 322710.Avin_35600 | (PF13565) | ||||
| 322710.Avin_16640 | (PF01609) | ||||
| 322710.Avin_45320 | (PF01609) | ||||
| 322710.Avin_43650 | (PF08028) | ||||
| 322710.Avin_28480 | + | ||||
| 322710.Avin_00700 | (PF13358) | ||||
| 322710.Avin_37570 | + | ||||
| 322710.Avin_07380 | (PF10685) | not used | |||
| 322710.Avin_10550 | (PF05187) | ||||
| 322710.Avin_29320 | (PF03928) | ||||
| 322710.Avin_30240 | + | ||||
| 322710.Avin_16630 | (PF00342) | ||||
| 322710.Avin_43640 | (PF08028) | ||||
| 322710.Avin_18340 | (PF01609) | ||||
| 322710.Avin_33450 | (PF13683) | ||||
| 322710.Avin_01390 | (PF00148) | ||||
| 322710.Avin_47000 | + | ||||
| 322710.Avin_25810 | (PF00565) | ||||
| 322710.Avin_48970 | (PF00148) | ||||
| 322710.Avin_01450 | (PF00148) | ||||
| 322710.Avin_30230 | (PF02371) | ||||
| 322710.Avin_12980 | (PF01583) | ||||
| 322710.Avin_49400 | (PF12708) | ||||
| 322710.Avin_41180 | (PF00565) | ||||
| 322710.Avin_02610 | (PF00148) | ||||
| 322710.Avin_35270 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.5 (5/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 2.25 (18/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (5/10 KEGG proteins)
Estimated copy number = 2.25 (18/8 KEGG proteins)
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