Effective results for Thermoanaerobacter pseudethanolicus ATCC 33223 (eggnog40)

Summary

Number of putative secreted proteins: 65
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 65 proteins (4 high, 61 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
340099.Teth39_1573				(PF06695)	(ER)
340099.Teth39_1252				PF16808	(ER)
340099.Teth39_1591				(PF06695)	(ER)
340099.Teth39_1580				PF08433	ER; not used
340099.Teth39_1836				(PF07837) (PF02971)
340099.Teth39_2262				(PF01991)
340099.Teth39_0128				(PF02371)
340099.Teth39_0129				(PF02371)
340099.Teth39_0126				(PF02371)
340099.Teth39_0127				(PF02371)
340099.Teth39_0631				(PF13401)
340099.Teth39_0254				PF06888
340099.Teth39_1385				(PF13936)
340099.Teth39_0138				(PF00078)
340099.Teth39_0131				(PF02371)
340099.Teth39_0130				(PF02371)
340099.Teth39_1869				(PF13401)
340099.Teth39_1717				(PF00731)
340099.Teth39_0097				(PF00078)
340099.Teth39_0658				(PF13936)
340099.Teth39_2209				(PF00078)
340099.Teth39_1606				(PF09664)
340099.Teth39_0887				(PF00078)
340099.Teth39_0219				(PF13936)
340099.Teth39_0523				(PF00078)
340099.Teth39_0456				(PF02371)
340099.Teth39_2033				(PF00078)
340099.Teth39_2034				(PF13401)
340099.Teth39_2037				(PF00078)
340099.Teth39_2211				(PF00078)
340099.Teth39_0680				(PF07085)
340099.Teth39_0997				(PF02371)
340099.Teth39_2206				(PF13401)
340099.Teth39_0847				(PF13936)
340099.Teth39_0058				(PF13401)
340099.Teth39_1802				(PF00731)
340099.Teth39_0049				(PF00078)
340099.Teth39_0148				(PF13936)
340099.Teth39_0149				(PF00078)
340099.Teth39_1868				(PF00078)
340099.Teth39_1564				(PF09664)
340099.Teth39_0242				(PF01880)
340099.Teth39_0499				(PF13936)
340099.Teth39_0961				(PF00078)
340099.Teth39_1778				(PF03161)
340099.Teth39_1510				(PF02371)
340099.Teth39_0163				(PF00078)
340099.Teth39_1766				(PF00078)
340099.Teth39_1430				(PF00078)
340099.Teth39_0255				(PF07085)
340099.Teth39_0173				(PF13936)
340099.Teth39_0594				(PF02371)
340099.Teth39_1539				(PF00731)
340099.Teth39_0914				(PF02371)
340099.Teth39_0723				PF00514
340099.Teth39_1418				(PF13401)
340099.Teth39_0113				(PF02371)
340099.Teth39_0422				(PF13401)
340099.Teth39_0429				(PF01880)
340099.Teth39_1465				(PF07085)
340099.Teth39_1462				(PF07085)
340099.Teth39_2045				(PF02371)
340099.Teth39_2044				(PF13936)
340099.Teth39_2047				(PF13401)
340099.Teth39_0932				(PF13936)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================