Metamenu

Effective results for Lactobacillus reuteri 100-23 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 85 proteins (19 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
349123.Lreu23DRAFT_4187(PF13276) (PF00665)(mitochondrial)
349123.Lreu23DRAFT_4823PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_3207PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_5193PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_4466(PF00665)(mitochondrial); (plastid)
349123.Lreu23DRAFT_5182(PF00344)ER
349123.Lreu23DRAFT_3827(PF00665)(mitochondrial)
349123.Lreu23DRAFT_4385(PF00344)(mitochondrial)
349123.Lreu23DRAFT_3631(PF00665)mitochondrial; (mitochondrial)
349123.Lreu23DRAFT_4555PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_4417PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_3296(PF01501)(ER); (plastid)
349123.Lreu23DRAFT_4573PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_4759PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_5022(PF00413)(ER)
349123.Lreu23DRAFT_4680PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_4538PF13518 (PF13276) (PF00665)
349123.Lreu23DRAFT_4535(PF00413)ER
349123.Lreu23DRAFT_4764(PF13276) (PF00665)
349123.Lreu23DRAFT_5106(PF00121)(mitochondrial)
349123.Lreu23DRAFT_3931(PF00078)
349123.Lreu23DRAFT_4824(PF00665)
349123.Lreu23DRAFT_4796(PF05870)
349123.Lreu23DRAFT_4795(PF05870)
349123.Lreu23DRAFT_4641(PF03577)
349123.Lreu23DRAFT_4257(PF00078)
349123.Lreu23DRAFT_5062(PF00665)
349123.Lreu23DRAFT_5064PF00910
349123.Lreu23DRAFT_3853(PF00665)
349123.Lreu23DRAFT_4812(PF00665)
349123.Lreu23DRAFT_3859(PF00078)
349123.Lreu23DRAFT_3595(PF00078)
349123.Lreu23DRAFT_4115(PF04886)
349123.Lreu23DRAFT_3261(PF00056)
349123.Lreu23DRAFT_4666(PF00078)
349123.Lreu23DRAFT_3584(PF00078)
349123.Lreu23DRAFT_5192(PF01501)
349123.Lreu23DRAFT_5195(PF00078)
349123.Lreu23DRAFT_5191(PF01501)
349123.Lreu23DRAFT_5190(PF01501)
349123.Lreu23DRAFT_4727(PF03577)
349123.Lreu23DRAFT_5050PF00910
349123.Lreu23DRAFT_4469(PF00078)
349123.Lreu23DRAFT_4465PF13518
349123.Lreu23DRAFT_4463(PF00078)
349123.Lreu23DRAFT_4599(PF00665)
349123.Lreu23DRAFT_4131(PF00056)
349123.Lreu23DRAFT_3253PF00173
349123.Lreu23DRAFT_4604(PF00665)
349123.Lreu23DRAFT_3073(PF00078)
349123.Lreu23DRAFT_3494(PF00413)
349123.Lreu23DRAFT_5085(PF00078)
349123.Lreu23DRAFT_3828PF13518
349123.Lreu23DRAFT_3707(PF00078)
349123.Lreu23DRAFT_3020(PF03577)
349123.Lreu23DRAFT_3022(PF00056)
349123.Lreu23DRAFT_4763PF13518
349123.Lreu23DRAFT_3732(PF03577)
349123.Lreu23DRAFT_5148(PF03577)
349123.Lreu23DRAFT_4889(PF00078)
349123.Lreu23DRAFT_4771PF00173
349123.Lreu23DRAFT_4772PF00173
349123.Lreu23DRAFT_4773PF00173
349123.Lreu23DRAFT_4416(PF00665)
349123.Lreu23DRAFT_4343(PF00078)
349123.Lreu23DRAFT_4189(PF00665)
349123.Lreu23DRAFT_4180(PF00078)
349123.Lreu23DRAFT_4752(PF00078)
349123.Lreu23DRAFT_3748(PF01501)
349123.Lreu23DRAFT_4517(PF00078)
349123.Lreu23DRAFT_5037(PF00056)
349123.Lreu23DRAFT_3797(PF00665)
349123.Lreu23DRAFT_3311(PF00078)
349123.Lreu23DRAFT_5156(PF00078)
349123.Lreu23DRAFT_5009(PF00665)
349123.Lreu23DRAFT_5008(PF00665)
349123.Lreu23DRAFT_5006PF00173
349123.Lreu23DRAFT_3438(PF00665)
349123.Lreu23DRAFT_4306(PF00078)
349123.Lreu23DRAFT_4539(PF00665)
349123.Lreu23DRAFT_4530(PF00665)
349123.Lreu23DRAFT_5014(PF00121)
349123.Lreu23DRAFT_3440(PF00665)
349123.Lreu23DRAFT_3444(PF00121)
349123.Lreu23DRAFT_4311(PF00056)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================