Metamenu

Effective results for Alkaliphilus oremlandii OhILAs (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 43 proteins (0 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
350688.Clos_1953(PF01558) (PF17147) (PF01855)(mitochondrial)
350688.Clos_1939(PF00163)(mitochondrial)
350688.Clos_2806(PF02915)(mitochondrial)
350688.Clos_2395(PF10662)mitochondrial
350688.Clos_0237(PF01558) (PF17147) (PF01855)
350688.Clos_0520(PF00163)mitochondrial; (mitochondrial)
350688.Clos_2829(PF16472)ER
350688.Clos_0792(PF10662)mitochondrial
350688.Clos_0669(PF11070)ER
350688.Clos_2410(PF17147) (PF01855)(mitochondrial)
350688.Clos_2124(PF01558) (PF17147) (PF01855)
350688.Clos_1571(PF17147) (PF01855)
350688.Clos_0027(PF01512)(mitochondrial)
350688.Clos_0361(PF07837) (PF02971)
350688.Clos_0580(PF07837) (PF02971)
350688.Clos_0132(PF16472)(mitochondrial)
350688.Clos_0049(PF01855)(mitochondrial)
350688.Clos_2356(PF06777)
350688.Clos_2770(PF12640)
350688.Clos_0989(PF01512)
350688.Clos_1840(PF02915)
350688.Clos_0403(PF04961)
350688.Clos_2391(PF01512)
350688.Clos_2389(PF06249)
350688.Clos_1041(PF01558)
350688.Clos_1040(PF01855)
350688.Clos_0174(PF14249)
350688.Clos_1569(PF01558)
350688.Clos_0617(PF02915)
350688.Clos_0294(PF04961)
350688.Clos_1775(PF01512)
350688.Clos_1996(PF02915)
350688.Clos_2248(PF02915)
350688.Clos_2251(PF01512)
350688.Clos_0808(PF06249)
350688.Clos_2408(PF01558)
350688.Clos_0929(PF01512)
350688.Clos_0071(PF01558)
350688.Clos_0070(PF01855)
350688.Clos_0687(PF02915)
350688.Clos_2331(PF02915)
350688.Clos_0276(PF01512)
350688.Clos_0050(PF01558)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================