Effective results for Brevibacillus brevis NBRC 100599 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 107 proteins (4 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
358681.BBR47_39850(PF08242)(ER); ER
358681.BBR47_56990(PF01497)ER
358681.BBR47_30780(PF00742)(mitochondrial)
358681.BBR47_13270(PF13787)ER
358681.BBR47_07830(PF01497)ER
358681.BBR47_30190(PF00742)(ER)
358681.BBR47_38680(PF09587)ER
358681.BBR47_39380(PF01497)ER
358681.BBR47_29920(PF01497)ER
358681.BBR47_33240(PF01497)ER
358681.BBR47_47490(PF02681)ER
358681.BBR47_14820(PF07998)ER
358681.BBR47_44940(PF01497)ER
358681.BBR47_07910(PF01497)ER
358681.BBR47_20140(PF01497)mitochondrial; (mitochondrial)
358681.BBR47_39490(PF01497)ER
358681.BBR47_22180(PF01497)ER
358681.BBR47_07880(PF01497)ER
358681.BBR47_55940(PF01497)(ER)
358681.BBR47_03430(PF01497)ER
358681.BBR47_51830(PF16472)ER
358681.BBR47_57780(PF01497)ER
358681.BBR47_19580(PF09587)(mitochondrial)
358681.BBR47_55140(PF02450)ER
358681.BBR47_57420(PF02681)ER
358681.BBR47_14840(PF01497)ER
358681.BBR47_57230(PF02450)ER
358681.BBR47_37460(PF01885)(mitochondrial)
358681.BBR47_52310(PF01497)mitochondrial
358681.BBR47_22150(PF01497)ER
358681.BBR47_55950(PF01497)mitochondrial
358681.BBR47_27770(PF09414)(mitochondrial)
358681.BBR47_03930(PF13787)ER
358681.BBR47_32770(PF01521)(ER); ER
358681.BBR47_51820(PF16472)ER
358681.BBR47_52480(PF01497)ER
358681.BBR47_26630(PF08439) (PF01432)
358681.BBR47_15420(PF03576)(mitochondrial)
358681.BBR47_25700(PF03576)(mitochondrial)
358681.BBR47_28930(PF13745)(mitochondrial)
358681.BBR47_59270(PF08439) (PF01432)
358681.BBR47_25720(PF08439) (PF01432)
358681.BBR47_25240(PF08439) (PF01432)
358681.BBR47_11470(PF08439) (PF01432)
358681.BBR47_31950(PF08242) (PF13745)
358681.BBR47_39840(PF08242) (PF13745)
358681.BBR47_28920(PF13745)(mitochondrial)
358681.BBR47_27880(PF13745)
358681.BBR47_58850(PF13271)
358681.BBR47_28720(PF12746)
358681.BBR47_33320(PF13271)
358681.BBR47_43430(PF12746)
358681.BBR47_31290(PF09587)
358681.BBR47_39600(PF02873)
358681.BBR47_37550(PF00742)
358681.BBR47_27890(PF13745)
358681.BBR47_35190PF08005
358681.BBR47_31470(PF03576)
358681.BBR47_33030(PF01521)
358681.BBR47_16070(PF00707)
358681.BBR47_46950(PF03945)
358681.BBR47_31980(PF13745)
358681.BBR47_48470(PF05076)
358681.BBR47_51970(PF13745)
358681.BBR47_51950(PF13745)
358681.BBR47_39530(PF01497)
358681.BBR47_33630(PF00707)
358681.BBR47_51510(PF05076)
358681.BBR47_21660(PF01521)
358681.BBR47_46370(PF09587)
358681.BBR47_11750PF02893
358681.BBR47_44630PF15636
358681.BBR47_57500(PF03142)
358681.BBR47_47700(PF01521)
358681.BBR47_39880(PF08242)
358681.BBR47_06190(PF03576)
358681.BBR47_58430(PF01497)
358681.BBR47_33570(PF09414)
358681.BBR47_03550(PF01521)
358681.BBR47_51980(PF13745)
358681.BBR47_31970(PF13745)
358681.BBR47_52640(PF05225)
358681.BBR47_32000(PF13745)
358681.BBR47_38360(PF02873)
358681.BBR47_39610(PF01521)
358681.BBR47_37540(PF09587)
358681.BBR47_32020(PF13745)
358681.BBR47_17160PF08635
358681.BBR47_27780(PF05076)
358681.BBR47_35980(PF01885)
358681.BBR47_44930(PF01497)
358681.BBR47_51960(PF13745)
358681.BBR47_28940(PF13745)
358681.BBR47_07900(PF01497)
358681.BBR47_23410(PF01432)
358681.BBR47_47500(PF01497)
358681.BBR47_09720(PF05076)
358681.BBR47_29500(PF13745)
358681.BBR47_22190(PF01497)
358681.BBR47_09560(PF12746)
358681.BBR47_03420(PF01497)
358681.BBR47_08820(PF01521)
358681.BBR47_39890(PF08242)
358681.BBR47_18540(PF00742)
358681.BBR47_29490(PF13745)
358681.BBR47_32570(PF13745)
358681.BBR47_39870(PF13745)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================