Metamenu

Effective results for Janthinobacterium sp. Marseille (eggnog40)

Summary

Number of putative secreted proteins: 111
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 36 proteins (0 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
375286.mma_1638(PF03797)(ER)
375286.mma_3268+(mitochondrial)
375286.mma_2709+(mitochondrial)
375286.mma_3278+ER
375286.mma_1619+ER
375286.mma_2402(PF03797)ER
375286.mma_2425(PF03797)mitochondrial
375286.mma_1998(PF03797)(mitochondrial)
375286.mma_1571+ER
375286.mma_2473(PF03797)mitochondrial
375286.mma_2475(PF03797)(mitochondrial)
375286.mma_3125(PF13429)ER
375286.mma_2468+ER
375286.mma_0597+ER
375286.mma_2035+ER
375286.mma_1856+(mitochondrial)
375286.mma_2333+ER
375286.mma_3312+ER
375286.mma_0371+ER
375286.mma_2237+ER
375286.mma_0941(PF16327)ER
375286.mma_0520(PF03797)ER; (ER)
375286.mma_2798(PF16327)(ER)
375286.mma_3376+ER
375286.mma_1595+ER
375286.mma_2100(PF02390)(ER)
375286.mma_0322+ER
375286.mma_3184+ER
375286.mma_1587(PF04982)mitochondrial; (mitochondrial)
375286.mma_2802(PF16327)ER
375286.mma_3224+ER
375286.mma_2977+(mitochondrial)
375286.mma_1061(PF03959)(mitochondrial)
375286.mma_1062(PF03797)ER
375286.mma_2129(PF13429)ER
375286.mma_3349+ER
375286.mma_1079+ER
375286.mma_2750(PF10571)(mitochondrial)
375286.mma_0664(PF03797)mitochondrial
375286.mma_2386+ER
375286.mma_3387+mitochondrial; (mitochondrial)
375286.mma_0654+(mitochondrial)
375286.mma_1721+(mitochondrial)
375286.mma_1340(PF03797)(ER)
375286.mma_1370+(plastid)
375286.mma_3067+(plastid)
375286.mma_2476(PF03797)plastid
375286.mma_2693+(mitochondrial)
375286.mma_2049+(ER)
375286.mma_2329+(mitochondrial)
375286.mma_3507(PF04982)(mitochondrial)
375286.mma_0499(PF03069)
375286.mma_3262+
375286.mma_3280(PF11969)
375286.mma_1287+
375286.mma_2070+
375286.mma_1618+
375286.mma_1297+
375286.mma_2089+
375286.mma_1975+
375286.mma_2421+
375286.mma_3628+
375286.mma_2183+
375286.mma_3458+
375286.mma_2187+
375286.mma_2474(PF03797)
375286.mma_2031+
375286.mma_1881+
375286.mma_1886(PF01668)
375286.mma_2523+
375286.mma_2522+
375286.mma_2038(PF01668)
375286.mma_3034+
375286.mma_3035+
375286.mma_1385+
375286.mma_1893(PF03069)
375286.mma_0784(PF03069)
375286.mma_2208+
375286.mma_0152(PF02390)
375286.mma_2653+
375286.mma_0553+
375286.mma_0550+
375286.mma_2499+
375286.mma_2943+
375286.mma_3300+
375286.mma_1922+
375286.mma_0521(PF03797)
375286.mma_2828(PF03069)
375286.mma_2953+
375286.mma_1598(PF03797)
375286.mma_1667+
375286.mma_1086+
375286.mma_0186(PF16983)
375286.mma_0882+
375286.mma_1126+
375286.mma_1270+
375286.mma_2974+
375286.mma_3356+
375286.mma_1119+
375286.mma_1804+
375286.mma_1036+
375286.mma_3652+
375286.mma_0450+
375286.mma_2359(PF03797)
375286.mma_2620+
375286.mma_3662(PF04982)
375286.mma_1711+
375286.mma_0714+
375286.mma_1629+
375286.mma_2928(PF02390)
375286.mma_3489+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================