Metamenu

Effective results for Gemmatimonas aurantiaca T-27 (eggnog40)

Summary

Number of putative secreted proteins: 180
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 180 proteins (7 high, 173 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
379066.GAU_2646(PF00930) (PF07676) (PF00326)mitochondrial; ER
379066.GAU_2322(PF14684) (PF07676) (PF03572)mitochondrial; (mitochondrial)
379066.GAU_1161(PF07676) (PF00930) (PF00326)ER; (ER)
379066.GAU_1065(PF00930) (PF07676) (PF00326)ER
379066.GAU_2737(PF00930) (PF00326)ER
379066.GAU_1458PF08309 (PF02368)(mitochondrial); plastid
379066.GAU_2216(PF00675) (PF05193)(ER)
379066.GAU_1102(PF14684) (PF03572)mitochondrial
379066.GAU_3554(PF00930) (PF00326)ER
379066.GAU_0146PF08309 (PF02368)ER
379066.GAU_0163(PF04389) (PF04253)mitochondrial; (mitochondrial)
379066.GAU_3471(PF03572) (PF11918)mitochondrial
379066.GAU_0739(PF00675) (PF05193)ER
379066.GAU_2665(PF00930) (PF00326)mitochondrial
379066.GAU_2480(PF07676) (PF00930) (PF00326)(plastid)
379066.GAU_0255(PF07676) (PF00326)ER
379066.GAU_1070(PF07676) (PF00326)ER
379066.GAU_1073(PF14684) (PF03572)ER
379066.GAU_1287(PF13620)ER
379066.GAU_1045(PF08530)(mitochondrial); (plastid)
379066.GAU_3171(PF16313)(ER); mitochondrial
379066.GAU_1055(PF02368)ER
379066.GAU_2203(PF08530)ER
379066.GAU_2201(PF13620)ER
379066.GAU_2106(PF07676)mitochondrial; (mitochondrial)
379066.GAU_2217(PF00675) (PF05193)(mitochondrial)
379066.GAU_2212(PF07676)ER; (ER)
379066.GAU_1118(PF13620)ER
379066.GAU_3602(PF16313)ER; (ER)
379066.GAU_0515(PF02368)ER
379066.GAU_2025(PF01244)(ER)
379066.GAU_2028(PF08530)ER
379066.GAU_1068(PF04389)mitochondrial
379066.GAU_3154(PF13620)ER
379066.GAU_0692(PF16313)ER
379066.GAU_1920(PF13620)ER
379066.GAU_3604(PF16313)mitochondrial; (mitochondrial)
379066.GAU_2169(PF13620)ER
379066.GAU_2303(PF04389)ER
379066.GAU_0991(PF03572)(ER)
379066.GAU_0206(PF02368)ER
379066.GAU_0689(PF13620)mitochondrial
379066.GAU_3455(PF04389)ER
379066.GAU_2577(PF13620)ER
379066.GAU_3136(PF04389)ER
379066.GAU_2799(PF00326)ER
379066.GAU_0052(PF00246)ER
379066.GAU_0237(PF01244)ER; (ER)
379066.GAU_0940(PF07676)ER
379066.GAU_1942(PF07676)(mitochondrial); (plastid)
379066.GAU_2327(PF13620)ER
379066.GAU_3308(PF04389)(mitochondrial)
379066.GAU_2326(PF13620)ER
379066.GAU_2324(PF13620)ER
379066.GAU_3548(PF13620)ER
379066.GAU_0046(PF04389)mitochondrial
379066.GAU_0043(PF11028)(ER); ER
379066.GAU_1974(PF00163)(mitochondrial)
379066.GAU_1372(PF04389)ER; (mitochondrial)
379066.GAU_1209(PF04389)ER
379066.GAU_1201(PF07676)mitochondrial
379066.GAU_2330(PF08530)ER
379066.GAU_3595(PF15902)ER
379066.GAU_1211(PF04389)ER; (ER)
379066.GAU_1212(PF13620)ER
379066.GAU_1213(PF13620)ER
379066.GAU_2188(PF01244)(mitochondrial)
379066.GAU_2982(PF00246)ER
379066.GAU_3213(PF00326)ER
379066.GAU_2854(PF00246)ER
379066.GAU_3450(PF08530)ER
379066.GAU_0801(PF02985)ER
379066.GAU_0021(PF01244)(ER)
379066.GAU_0371(PF13620)ER
379066.GAU_0977PF08309ER
379066.GAU_0972(PF00246)mitochondrial; (mitochondrial)
379066.GAU_1510(PF04389)ER
379066.GAU_1351(PF13620)ER; (ER)
379066.GAU_1353(PF07676) (PF00326)plastid
379066.GAU_1228(PF00326)ER
379066.GAU_2199(PF13620)ER
379066.GAU_3465(PF00326)(mitochondrial)
379066.GAU_3714(PF00246)mitochondrial; (mitochondrial)
379066.GAU_3487(PF00326)ER
379066.GAU_0741(PF02368)ER
379066.GAU_1438(PF13620)(mitochondrial)
379066.GAU_1436(PF00246)ER
379066.GAU_1345(PF13620)mitochondrial
379066.GAU_2210(PF03572)ER
379066.GAU_2053(PF00326)ER
379066.GAU_3476(PF03572) (PF11918)(mitochondrial)
379066.GAU_3701(PF02368)ER; (ER)
379066.GAU_3499(PF00326)ER
379066.GAU_0910(PF15902)ER
379066.GAU_0170(PF07676)(mitochondrial); (plastid)
379066.GAU_0171(PF03572)ER
379066.GAU_3644(PF13620)ER
379066.GAU_3808(PF13620)ER
379066.GAU_3802(PF03572)mitochondrial
379066.GAU_0109(PF12862)mitochondrial
379066.GAU_2677(PF13620)(mitochondrial)
379066.GAU_2923(PF02368)(ER); plastid
379066.GAU_2922(PF02368)(mitochondrial)
379066.GAU_3038(PF04389)mitochondrial; (mitochondrial)
379066.GAU_3034(PF13620)ER
379066.GAU_3035(PF13620)(ER)
379066.GAU_0280(PF03572)ER
379066.GAU_1462(PF13620)ER
379066.GAU_1395(PF11028)ER
379066.GAU_1088(PF07676) (PF04389)(mitochondrial)
379066.GAU_1262(PF04389)mitochondrial; (ER)
379066.GAU_2666(PF07676)ER
379066.GAU_3283(PF03572)ER
379066.GAU_2801(PF00163)mitochondrial
379066.GAU_2803(PF00246)(mitochondrial)
379066.GAU_0127(PF13620)ER
379066.GAU_1277(PF11028)(mitochondrial); plastid
379066.GAU_2654(PF07676)(mitochondrial); mitochondrial
379066.GAU_2656(PF00326)ER
379066.GAU_2651(PF00246)mitochondrial
379066.GAU_2341(PF15902)mitochondrial; (mitochondrial)
379066.GAU_0130(PF05193)ER
379066.GAU_3172(PF13620)plastid
379066.GAU_0899(PF02971) (PF07837)
379066.GAU_3769(PF01244)(mitochondrial)
379066.GAU_0213PF08309(ER)
379066.GAU_3311(PF13620)(mitochondrial)
379066.GAU_1373(PF07676) (PF00326)
379066.GAU_3117(PF15902)(plastid)
379066.GAU_1355(PF13620)(mitochondrial)
379066.GAU_3919(PF00675) (PF05193)
379066.GAU_3918(PF00675) (PF05193)
379066.GAU_1763(PF00675) (PF05193)
379066.GAU_3278PF01231(ER)
379066.GAU_2607(PF00675) (PF05193)
379066.GAU_0724(PF13620)(mitochondrial)
379066.GAU_2675(PF07075)plastid
379066.GAU_3659(PF00675) (PF05193)
379066.GAU_0129(PF00675) (PF05193)
379066.GAU_2298(PF13366)
379066.GAU_0097(PF04389)
379066.GAU_3478(PF03572)
379066.GAU_0261(PF02368)
379066.GAU_1116(PF00025)
379066.GAU_0514(PF02368)
379066.GAU_0981(PF03959)
379066.GAU_0693(PF07075)
379066.GAU_0691(PF07075)
379066.GAU_1036(PF07676)
379066.GAU_2164(PF13620)
379066.GAU_3146(PF03630)
379066.GAU_3564PF08309
379066.GAU_3899(PF16561)
379066.GAU_0441(PF02368)
379066.GAU_3307(PF08530)
379066.GAU_3544(PF13620)
379066.GAU_0957(PF16561)
379066.GAU_3686(PF03572)
379066.GAU_2336(PF13620)
379066.GAU_3847(PF04389)
379066.GAU_3598(PF00326)
379066.GAU_1363(PF13366)
379066.GAU_3920(PF01457)
379066.GAU_3851(PF13620)
379066.GAU_0802(PF02985)
379066.GAU_1999(PF07075)
379066.GAU_3862(PF02368)
379066.GAU_0582(PF10462)
379066.GAU_1188(PF03572)
379066.GAU_2297(PF00326)
379066.GAU_2470(PF13620)
379066.GAU_3700(PF02368)
379066.GAU_3248(PF13620)
379066.GAU_1410(PF00025)
379066.GAU_0431PF08309
379066.GAU_0113(PF13366)
379066.GAU_3282(PF13366)
379066.GAU_2932(PF08530)
379066.GAU_1278(PF07676)
379066.GAU_3837(PF02368)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================