Effective results for Fervidobacterium nodosum Rt17-B1 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
381764.Fnod_1180				(PF16561)	ER
381764.Fnod_1616				(PF16561)	ER
381764.Fnod_0214				PF04117	ER
381764.Fnod_1682				(PF10142)	ER
381764.Fnod_0808				(PF07837) (PF02971)
381764.Fnod_1186				(PF01610)
381764.Fnod_0552				(PF12646)
381764.Fnod_1423				(PF11969)
381764.Fnod_1437				(PF01610)
381764.Fnod_1434				(PF01610)
381764.Fnod_0446				(PF00862)
381764.Fnod_1356				PF08373
381764.Fnod_1562				(PF01610)
381764.Fnod_0558				(PF00075)
381764.Fnod_1348				(PF01610)
381764.Fnod_0351				(PF01610)
381764.Fnod_0993				(PF01257)
381764.Fnod_0992				(PF01257)
381764.Fnod_0995				(PF01257)
381764.Fnod_1023				(PF01610)
381764.Fnod_1629				PF11443
381764.Fnod_1633				(PF00075)
381764.Fnod_0683				(PF00075)
381764.Fnod_0231				(PF09419)
381764.Fnod_0225				(PF01257)
381764.Fnod_0227				(PF01257)
381764.Fnod_0226				(PF01257)
381764.Fnod_0319				(PF01257)
381764.Fnod_0249				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================