Effective results for Fervidobacterium nodosum Rt17-B1 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
381764.Fnod_1180(PF16561)ER
381764.Fnod_1616(PF16561)ER
381764.Fnod_0214PF04117ER
381764.Fnod_1682(PF10142)ER
381764.Fnod_0808(PF07837) (PF02971)
381764.Fnod_1186(PF01610)
381764.Fnod_0552(PF12646)
381764.Fnod_1423(PF11969)
381764.Fnod_1437(PF01610)
381764.Fnod_1434(PF01610)
381764.Fnod_0446(PF00862)
381764.Fnod_1356PF08373
381764.Fnod_1562(PF01610)
381764.Fnod_0558(PF00075)
381764.Fnod_1348(PF01610)
381764.Fnod_0351(PF01610)
381764.Fnod_0993(PF01257)
381764.Fnod_0992(PF01257)
381764.Fnod_0995(PF01257)
381764.Fnod_1023(PF01610)
381764.Fnod_1629PF11443
381764.Fnod_1633(PF00075)
381764.Fnod_0683(PF00075)
381764.Fnod_0231(PF09419)
381764.Fnod_0225(PF01257)
381764.Fnod_0227(PF01257)
381764.Fnod_0226(PF01257)
381764.Fnod_0319(PF01257)
381764.Fnod_0249(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================