Metamenu

Effective results for Clostridium novyi NT (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 55 proteins (29 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
386415.NT01CX_0283(PF08367) (PF13205)(ER); ER
386415.NT01CX_0979(PF01477) (PF00882)(ER); ER
386415.NT01CX_1638(PF00882)mitochondrial
386415.NT01CX_1253(PF13205)ER
386415.NT01CX_1521(PF13205)ER
386415.NT01CX_0173(PF13205)ER
386415.NT01CX_1143(PF00163)mitochondrial
386415.NT01CX_2339(PF00163)mitochondrial
386415.NT01CX_1613(PF13205)ER
386415.NT01CX_0649(PF13205)
386415.NT01CX_0267(PF12638)
386415.NT01CX_0268PF05598
386415.NT01CX_1930PF05598
386415.NT01CX_0396PF05598
386415.NT01CX_2038PF05598
386415.NT01CX_1406PF05598
386415.NT01CX_0448PF05598
386415.NT01CX_0674(PF13151)
386415.NT01CX_1894(PF01633)
386415.NT01CX_1644(PF01991)
386415.NT01CX_1641PF03179
386415.NT01CX_0849(PF07892)
386415.NT01CX_1460PF05598
386415.NT01CX_0705PF05598
386415.NT01CX_0936(PF06777)
386415.NT01CX_0938PF05598
386415.NT01CX_0584(PF01633)
386415.NT01CX_1212PF05598
386415.NT01CX_0610(PF07892)
386415.NT01CX_0036PF05598
386415.NT01CX_1667PF05598
386415.NT01CX_1662(PF08367)
386415.NT01CX_1539PF05598
386415.NT01CX_0652(PF12646)
386415.NT01CX_0499PF05598
386415.NT01CX_2090PF05598
386415.NT01CX_0570(PF01633)
386415.NT01CX_0972PF05598
386415.NT01CX_1493PF05598
386415.NT01CX_0214(PF09370)
386415.NT01CX_0216(PF09370)
386415.NT01CX_1968PF05598
386415.NT01CX_2055PF05598
386415.NT01CX_2058(PF13205)
386415.NT01CX_1370PF05598
386415.NT01CX_1577PF05598
386415.NT01CX_2331PF05598
386415.NT01CX_0691PF05598
386415.NT01CX_0769PF05598
386415.NT01CX_1343PF05598
386415.NT01CX_0169PF05598
386415.NT01CX_2409PF05598
386415.NT01CX_1434(PF08357)
386415.NT01CX_0838(PF02732)
386415.NT01CX_2015PF05598

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================