Effective results for Lactobacillus brevis ATCC 367 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 57 proteins (14 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
387344.LVIS_1805				PF13936 (PF00665)	mitochondrial
387344.LVIS_1940				PF13936 (PF00665)	mitochondrial
387344.LVIS_1721				PF13936 (PF00665)	mitochondrial
387344.LVIS_1726				PF13936 (PF00665)	mitochondrial
387344.LVIS_1624				(PF00665)	(mitochondrial)
387344.LVIS_0376				(PF00665)	(mitochondrial)
387344.LVIS_0151				(PF00665)	(mitochondrial)
387344.LVIS_0808				(PF00413)	ER
387344.LVIS_0565				(PF12051)	ER
387344.LVIS_1966				(PF00413)	ER; (ER)
387344.LVIS_2143				(PF05935)	ER
387344.LVIS_0047				(PF00665)	(mitochondrial)
387344.LVIS_0054				(PF03596)	ER
387344.LVIS_1557				(PF03577)	(mitochondrial)
387344.LVIS_2036				(PF13350)	ER
387344.LVIS_1528				(PF00413)	ER
387344.LVIS_1020				(PF00413)	ER
387344.LVIS_1874				(PF00665)	(mitochondrial)
387344.LVIS_0405				(PF05935)	ER
387344.LVIS_0224				(PF00665)	(mitochondrial)
387344.LVIS_0221				(PF03596)	ER
387344.LVIS_2253				(PF00665)	(mitochondrial)
387344.LVIS_1645				(PF00665)	(mitochondrial)
387344.LVIS_1644				(PF13350)	ER; (ER)
387344.LVIS_0160				(PF00413)	ER
387344.LVIS_0716				PF13936 (PF00665)
387344.LVIS_0561				PF13936 (PF00665)
387344.LVIS_0049				PF13936 (PF00665)
387344.LVIS_0043				PF13936 (PF00665)
387344.LVIS_2174				PF13936 (PF00665)
387344.LVIS_2132				(PF02275)	(plastid)
387344.LVIS_1300				PF13936 (PF00665)
387344.LVIS_0896				PF13936 (PF00665)
387344.LVIS_1321				PF13936 (PF00665)
387344.LVIS_0121				PF13936 (PF00665)
387344.LVIS_1747				PF13936 (PF00665)
387344.LVIS_0900				(PF03577)
387344.LVIS_1754				(PF03577)
387344.LVIS_0396				(PF03596)
387344.LVIS_0026				(PF00413)
387344.LVIS_1998				(PF13350)
387344.LVIS_1962				(PF02275)
387344.LVIS_0052				(PF12464)
387344.LVIS_0263				(PF03577)
387344.LVIS_0266				(PF12464)
387344.LVIS_1950				(PF10437)
387344.LVIS_0180				(PF10437)
387344.LVIS_1928				(PF12464)
387344.LVIS_1739				(PF12464)
387344.LVIS_1598				(PF13350)
387344.LVIS_2245				(PF12464)
387344.LVIS_1801				(PF02275)
387344.LVIS_0231				(PF13350)
387344.LVIS_2054				(PF12051)
387344.LVIS_1503				(PF03577)
387344.LVIS_1647				(PF10437)
387344.LVIS_1745				(PF12464)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================