Effective results for Streptococcus sanguinis SK36 (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 108
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 51 proteins (2 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
388919.SSA_1476			+		ER
388919.SSA_0127				(PF00344)	mitochondrial
388919.SSA_0832				(PF00344)	ER
388919.SSA_1384			+		ER
388919.SSA_1990			+		ER
388919.SSA_1991			+		ER
388919.SSA_1997				(PF02517)	ER
388919.SSA_0021			+		ER
388919.SSA_0152			+		mitochondrial
388919.SSA_0931			+		ER
388919.SSA_0803			+		ER
388919.SSA_2225				PF02916	(mitochondrial)
388919.SSA_0036				(PF05257)	ER
388919.SSA_0424			+		ER
388919.SSA_0817			+		ER
388919.SSA_2305			+		ER; (ER)
388919.SSA_1845			+		(mitochondrial)
388919.SSA_1339			+		ER
388919.SSA_0002			+		mitochondrial; (mitochondrial)
388919.SSA_0019				(PF05257)	ER
388919.SSA_1544			+		ER
388919.SSA_0765				(PF02517)	ER
388919.SSA_0766				(PF02517)	ER
388919.SSA_0162			+		mitochondrial
388919.SSA_2327			+		ER
388919.SSA_1315			+		ER
388919.SSA_1704			+		ER
388919.SSA_0750			+		ER
388919.SSA_0753			+		ER
388919.SSA_0375			+		ER
388919.SSA_1337			+		(ER)
388919.SSA_0193				(PF02517)	ER
388919.SSA_2121				(PF05738)	ER
388919.SSA_0700				(PF02517)	ER
388919.SSA_0227				(PF05738)	ER
388919.SSA_1591				(PF03577)	ER
388919.SSA_1593				(PF03577)	ER
388919.SSA_1740				(PF02517)	(mitochondrial)
388919.SSA_1909			+		ER
388919.SSA_0727				(PF02517)	(ER)
388919.SSA_1633				(PF05738)	ER
388919.SSA_1632				(PF05738)	ER
388919.SSA_1634				(PF05738)	ER
388919.SSA_0346				(PF02517)	(ER)
388919.SSA_1129			+		ER
388919.SSA_2077				(PF02517)	ER
388919.SSA_2252				(PF02517)	ER
388919.SSA_1813			+		(ER)
388919.SSA_1357				(PF02517)	(mitochondrial)
388919.SSA_1358				(PF02517)	(ER)
388919.SSA_0403				(PF02517)	ER
388919.SSA_0397				(PF13787)	ER
388919.SSA_0714				(PF13787)	ER
388919.SSA_2004			+		(mitochondrial)
388919.SSA_0093			+		mitochondrial; (mitochondrial)
388919.SSA_0253				(PF02517)	(ER); ER
388919.SSA_0067			+		ER
388919.SSA_0617			+		ER
388919.SSA_2340			+		mitochondrial; (mitochondrial)
388919.SSA_0599				(PF03083)	ER
388919.SSA_1663				(PF05738)	ER
388919.SSA_0126			+		(mitochondrial)
388919.SSA_1042			+		(ER)
388919.SSA_2314			+		(mitochondrial)
388919.SSA_0304				(PF05257)	(ER)
388919.SSA_0164				(PF05257)	(ER)
388919.SSA_1555			+		(plastid)
388919.SSA_1767			+		(mitochondrial)
388919.SSA_1370				(PF02517)	(mitochondrial)
388919.SSA_0434				(PF02971) (PF07837)
388919.SSA_0438			+		(mitochondrial)
388919.SSA_0394				(PF03083)	(ER)
388919.SSA_2382			+		(plastid)
388919.SSA_0453				(PF03714)
388919.SSA_1479			+
388919.SSA_1989			+
388919.SSA_2181			+
388919.SSA_1861			+
388919.SSA_1996			+
388919.SSA_0158			+
388919.SSA_0935			+
388919.SSA_1857			+
388919.SSA_0324			+
388919.SSA_0925			+
388919.SSA_0818				(PF09359)
388919.SSA_2239			+
388919.SSA_0316			+
388919.SSA_0793			+
388919.SSA_2206			+
388919.SSA_1942			+
388919.SSA_2148			+
388919.SSA_2210			+
388919.SSA_1227			+
388919.SSA_1170			+
388919.SSA_1482				(PF03714)
388919.SSA_1488			+
388919.SSA_1336			+
388919.SSA_1102			+
388919.SSA_0568				(PF02938)
388919.SSA_0694			+
388919.SSA_0368			+
388919.SSA_2120			+
388919.SSA_2123			+
388919.SSA_2270				(PF02938)
388919.SSA_2278			+
388919.SSA_1540				(PF05495)
388919.SSA_0707			+
388919.SSA_0515			+
388919.SSA_0356				(PF03577)
388919.SSA_1291				PF15636
388919.SSA_0728				(PF02517)
388919.SSA_0348				(PF02517)
388919.SSA_0656			+
388919.SSA_2076			+
388919.SSA_1087			+
388919.SSA_1756			+
388919.SSA_1620			+
388919.SSA_0669			+
388919.SSA_0246			+
388919.SSA_0860				(PF05257)
388919.SSA_0522			+
388919.SSA_2384			+
388919.SSA_1930			+
388919.SSA_0068			+
388919.SSA_0605			+
388919.SSA_0264			+
388919.SSA_2026				(PF03596)
388919.SSA_2288				(PF03596)
388919.SSA_1018			+
388919.SSA_1079				(PF02517)
388919.SSA_2034			+
388919.SSA_2342				(PF09359)
388919.SSA_1889			+
388919.SSA_1666				(PF05738)
388919.SSA_0131			+
388919.SSA_2378			+
388919.SSA_2372			+
388919.SSA_0597			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================