Metamenu

Effective results for Caminibacter mediatlanticus TB-2 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 16 proteins (0 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391592.CMTB2_06291(PF01880)(ER); ER
391592.CMTB2_06011(PF01058)(mitochondrial)
391592.CMTB2_04422(PF02516)ER
391592.CMTB2_07281(PF01058)(mitochondrial)
391592.CMTB2_04712(PF03162)mitochondrial
391592.CMTB2_01044(PF03092)mitochondrial; (mitochondrial)
391592.CMTB2_07231(PF01058)
391592.CMTB2_00884(PF01058)
391592.CMTB2_07241(PF01058)
391592.CMTB2_03548(PF01058)
391592.CMTB2_08550(PF14792)
391592.CMTB2_00209(PF16114)
391592.CMTB2_08840(PF01880)
391592.CMTB2_06141(PF02943)
391592.CMTB2_02178(PF01058)
391592.CMTB2_06146(PF02943)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================