Metamenu

Effective results for Limnobacter sp. MED105 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391597.LMED105_12497(PF07819)ER
391597.LMED105_09577(PF13664)ER
391597.LMED105_02058(PF14539)mitochondrial; (mitochondrial)
391597.LMED105_10285(PF04734) (PF17048)(ER)
391597.LMED105_14750(PF04734)ER
391597.LMED105_05522(PF13664)ER
391597.LMED105_09602(PF11397)ER
391597.LMED105_04962(PF07819)ER
391597.LMED105_16123(PF07250)ER
391597.LMED105_02193(PF03552)(mitochondrial)
391597.LMED105_04092(PF14539)(ER)
391597.LMED105_04087(PF14539)
391597.LMED105_03847(PF01786)
391597.LMED105_04447(PF07819)
391597.LMED105_10895(PF07819)
391597.LMED105_13493(PF14539)
391597.LMED105_09382(PF10013)not used
391597.LMED105_15509(PF02460)
391597.LMED105_02805(PF03552)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================