Metamenu

Effective results for Marinomonas sp. MWYL1 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 69 proteins (3 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
400668.Mmwyl1_4436(PF03480)ER
400668.Mmwyl1_4435(PF01970)ER
400668.Mmwyl1_1554(PF07386)ER
400668.Mmwyl1_3806(PF03480)(ER)
400668.Mmwyl1_3162(PF01970)ER
400668.Mmwyl1_0209(PF03480)(mitochondrial)
400668.Mmwyl1_0858(PF03480)(mitochondrial)
400668.Mmwyl1_3172(PF03480)ER
400668.Mmwyl1_3915(PF03547)ER
400668.Mmwyl1_3917(PF03547)ER
400668.Mmwyl1_3911(PF01970)ER
400668.Mmwyl1_0919(PF03480)ER
400668.Mmwyl1_2539(PF07386)ER
400668.Mmwyl1_0487(PF14099)ER
400668.Mmwyl1_0671(PF03480)ER
400668.Mmwyl1_3118(PF03480)(mitochondrial)
400668.Mmwyl1_0492(PF14099)ER
400668.Mmwyl1_0272(PF03480)ER
400668.Mmwyl1_1471(PF03480)ER
400668.Mmwyl1_3933(PF01970)ER
400668.Mmwyl1_0644(PF03480)ER
400668.Mmwyl1_0645(PF03480)ER
400668.Mmwyl1_3704(PF03480)ER
400668.Mmwyl1_1815(PF03480)ER
400668.Mmwyl1_0034(PF03480)mitochondrial
400668.Mmwyl1_0039(PF03480)ER; (ER)
400668.Mmwyl1_3393(PF07386)ER
400668.Mmwyl1_1801(PF01970)ER
400668.Mmwyl1_0537(PF03547)ER
400668.Mmwyl1_1481(PF03767)ER; (ER)
400668.Mmwyl1_2293(PF03480)(ER)
400668.Mmwyl1_4440(PF03480)ER
400668.Mmwyl1_4441(PF03480)ER
400668.Mmwyl1_2873(PF03547)ER
400668.Mmwyl1_0526(PF03480)ER
400668.Mmwyl1_2451(PF03480)(mitochondrial); mitochondrial
400668.Mmwyl1_3087(PF03480)ER
400668.Mmwyl1_4185(PF03547)(ER)
400668.Mmwyl1_3860(PF03767)ER
400668.Mmwyl1_1910(PF01970)(ER)
400668.Mmwyl1_0500(PF01970)(ER)
400668.Mmwyl1_2139(PF03547)ER
400668.Mmwyl1_3536(PF03547)ER
400668.Mmwyl1_3944(PF03480)ER
400668.Mmwyl1_3043(PF03480)(ER)
400668.Mmwyl1_2784(PF03480)ER; (ER)
400668.Mmwyl1_0043(PF03480)ER
400668.Mmwyl1_2962PF01283ER
400668.Mmwyl1_3024(PF03480)ER
400668.Mmwyl1_3023(PF03480)ER
400668.Mmwyl1_4353(PF09994)(ER)
400668.Mmwyl1_0709(PF03480)(mitochondrial)
400668.Mmwyl1_0527(PF09994)(ER)
400668.Mmwyl1_0512(PF03480)(ER)
400668.Mmwyl1_0125(PF03767)
400668.Mmwyl1_2991(PF11969)
400668.Mmwyl1_1639(PF03662)
400668.Mmwyl1_0698(PF03480)
400668.Mmwyl1_3420PF05887
400668.Mmwyl1_2466(PF12038)
400668.Mmwyl1_4197PF07984
400668.Mmwyl1_1642(PF00026)
400668.Mmwyl1_2593(PF01409)
400668.Mmwyl1_3183(PF01970)
400668.Mmwyl1_3854(PF01970)
400668.Mmwyl1_3542(PF04383)
400668.Mmwyl1_0083(PF01409)
400668.Mmwyl1_0561(PF04383)
400668.Mmwyl1_1797(PF09994)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================