Effective results for Anaeromyxobacter sp. Fw109-5 (eggnog40)
Summary
Number of putative secreted proteins: 217
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 45 eukaryotic-like domains, contained in 217 proteins (18 high, 199 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 404589.Anae109_4492 | (PF13432) (PF13174) | ER | |||
| 404589.Anae109_3402 | (PF13432) (PF13174) | ER | |||
| 404589.Anae109_1669 | (PF01814) | (mitochondrial) | |||
| 404589.Anae109_1685 | (PF01814) | (mitochondrial) | |||
| 404589.Anae109_0318 | (PF02446) | ER | |||
| 404589.Anae109_3573 | (PF04885) | ER | |||
| 404589.Anae109_3774 | (PF13432) | ER | |||
| 404589.Anae109_3791 | (PF01844) | (mitochondrial) | |||
| 404589.Anae109_1300 | (PF01844) | (mitochondrial) | |||
| 404589.Anae109_1953 | (PF13432) | ER; (ER) | |||
| 404589.Anae109_2596 | (PF04143) | ER; (ER) | |||
| 404589.Anae109_2118 | (PF02163) | ER | |||
| 404589.Anae109_1362 | PF13320 | ER | |||
| 404589.Anae109_0141 | (PF13432) | ER | |||
| 404589.Anae109_3850 | (PF01844) | (mitochondrial) | |||
| 404589.Anae109_2853 | (PF14686) | ER | |||
| 404589.Anae109_1804 | (PF01597) | ER | |||
| 404589.Anae109_3193 | (PF01814) | mitochondrial; (mitochondrial) | |||
| 404589.Anae109_2665 | (PF03283) | ER | |||
| 404589.Anae109_2464 | (PF13432) | ER | |||
| 404589.Anae109_1161 | (PF02163) | ER | |||
| 404589.Anae109_0509 | (PF09861) | (mitochondrial) | |||
| 404589.Anae109_0503 | PF13320 | ER | |||
| 404589.Anae109_0344 | (PF01844) | (mitochondrial) | |||
| 404589.Anae109_0437 | PF14360 | (ER) | |||
| 404589.Anae109_2277 | (PF07994) | ER | |||
| 404589.Anae109_2936 | (PF13174) | ER | |||
| 404589.Anae109_3477 | (PF13432) | ER | |||
| 404589.Anae109_3476 | (PF13432) | ER | |||
| 404589.Anae109_3345 | (PF04143) | ER | |||
| 404589.Anae109_2294 | (PF13432) | (mitochondrial) | |||
| 404589.Anae109_2240 | (PF13492) | (mitochondrial); (plastid) | |||
| 404589.Anae109_2289 | (PF13432) | ER | |||
| 404589.Anae109_0259 | (PF13432) | ER | |||
| 404589.Anae109_3703 | (PF02163) | ER | |||
| 404589.Anae109_3386 | (PF13432) | ER | |||
| 404589.Anae109_2255 | (PF13432) | ER | |||
| 404589.Anae109_4164 | (PF01814) | (mitochondrial) | |||
| 404589.Anae109_3717 | (PF13431) | ER | |||
| 404589.Anae109_3399 | (PF00158) | (mitochondrial) | |||
| 404589.Anae109_4278 | (PF01597) | ER | |||
| 404589.Anae109_3011 | (PF02358) | (mitochondrial) | |||
| 404589.Anae109_1621 | PF13320 | ER | |||
| 404589.Anae109_1395 | PF13320 | ER | |||
| 404589.Anae109_4108 | (PF04143) | ER; (ER) | |||
| 404589.Anae109_4107 | (PF04143) | ER | |||
| 404589.Anae109_4291 | (PF07994) | (mitochondrial) | |||
| 404589.Anae109_1897 | (PF13432) | (ER) | |||
| 404589.Anae109_2771 | PF09239 | (mitochondrial) | |||
| 404589.Anae109_0677 | (PF13432) | mitochondrial | |||
| 404589.Anae109_3694 | (PF13432) | ER | |||
| 404589.Anae109_3963 | (PF13432) | ER | |||
| 404589.Anae109_2761 | (PF06245) | mitochondrial | |||
| 404589.Anae109_1646 | PF14008 | mitochondrial | |||
| 404589.Anae109_0335 | (PF03283) | ER | |||
| 404589.Anae109_3378 | PF14008 | ER | |||
| 404589.Anae109_3756 | (PF13174) | ER | |||
| 404589.Anae109_1528 | (PF13431) | mitochondrial; ER | |||
| 404589.Anae109_0923 | (PF04885) | ER | |||
| 404589.Anae109_2963 | (PF01814) | (ER) | |||
| 404589.Anae109_2966 | (PF02446) | (mitochondrial) | |||
| 404589.Anae109_2092 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1061 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1847 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1687 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1332 | (PF01844) | (mitochondrial) | |||
| 404589.Anae109_0684 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3777 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3400 | (PF01844) | (plastid) | |||
| 404589.Anae109_3404 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1951 | (PF00158) (PF02954) | ||||
| 404589.Anae109_2442 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1563 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0965 | (PF00158) (PF02954) | ||||
| 404589.Anae109_2106 | (PF06176) | (mitochondrial) | |||
| 404589.Anae109_1798 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1449 | (PF01844) | (plastid) | |||
| 404589.Anae109_3191 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1017 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0506 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4152 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4158 | (PF01844) | (plastid) | |||
| 404589.Anae109_2878 | (PF00158) (PF02954) | ||||
| 404589.Anae109_2492 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1355 | (PF01814) | (ER) | |||
| 404589.Anae109_3045 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1105 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4399 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1431 | (PF01844) | (plastid) | |||
| 404589.Anae109_3075 | (PF01844) | (plastid) | |||
| 404589.Anae109_3385 | (PF13432) (PF13174) | ||||
| 404589.Anae109_2258 | (PF00158) (PF02954) | ||||
| 404589.Anae109_2429 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4389 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0732 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0889 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0086 | (PF00158) (PF02954) | ||||
| 404589.Anae109_2620 | (PF00158) (PF02954) | ||||
| 404589.Anae109_1632 | (PF01844) | (plastid) | |||
| 404589.Anae109_1700 | (PF01844) | (plastid) | |||
| 404589.Anae109_1414 | (PF06245) | (mitochondrial) | |||
| 404589.Anae109_4112 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3013 | (PF00012) | (plastid) | |||
| 404589.Anae109_3725 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3359 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0671 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3039 | (PF01844) | (plastid) | |||
| 404589.Anae109_3032 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3581 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4341 | (PF13432) (PF13174) | ||||
| 404589.Anae109_0110 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0601 | (PF00158) (PF02954) | ||||
| 404589.Anae109_3115 | (PF13432) (PF13174) | ||||
| 404589.Anae109_2379 | (PF00158) (PF02954) | ||||
| 404589.Anae109_0852 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4242 | (PF00158) (PF02954) | ||||
| 404589.Anae109_4467 | (PF00025) | ||||
| 404589.Anae109_3769 | (PF01142) | ||||
| 404589.Anae109_2787 | PF07998 | ||||
| 404589.Anae109_1797 | PF07998 | ||||
| 404589.Anae109_1840 | (PF13432) | ||||
| 404589.Anae109_1686 | (PF01814) | ||||
| 404589.Anae109_4257 | (PF00158) | ||||
| 404589.Anae109_0006 | PF07998 | ||||
| 404589.Anae109_4500 | (PF04519) | ||||
| 404589.Anae109_4470 | (PF02163) | ||||
| 404589.Anae109_4471 | (PF13432) | ||||
| 404589.Anae109_4474 | (PF00012) | ||||
| 404589.Anae109_2683 | (PF00012) | ||||
| 404589.Anae109_2428 | (PF01814) | ||||
| 404589.Anae109_2426 | (PF01814) | ||||
| 404589.Anae109_1302 | (PF14791) | ||||
| 404589.Anae109_0942 | (PF13432) | ||||
| 404589.Anae109_3547 | (PF13432) | ||||
| 404589.Anae109_3145 | (PF01814) | ||||
| 404589.Anae109_2128 | (PF05189) | ||||
| 404589.Anae109_2233 | (PF00012) | ||||
| 404589.Anae109_2543 | (PF13492) | ||||
| 404589.Anae109_0659 | (PF13432) | ||||
| 404589.Anae109_0792 | (PF13492) | ||||
| 404589.Anae109_0975 | PF10393 | ||||
| 404589.Anae109_2205 | (PF02954) | ||||
| 404589.Anae109_2202 | PF00154 | ||||
| 404589.Anae109_2595 | (PF04143) | ||||
| 404589.Anae109_0816 | (PF01844) | ||||
| 404589.Anae109_4021 | (PF05706) | ||||
| 404589.Anae109_1969 | (PF05761) | ||||
| 404589.Anae109_1568 | (PF00012) | ||||
| 404589.Anae109_3528 | (PF04519) | ||||
| 404589.Anae109_2911 | (PF08326) | ||||
| 404589.Anae109_1802 | (PF01597) | ||||
| 404589.Anae109_1378 | (PF01142) | ||||
| 404589.Anae109_1481 | (PF13432) | ||||
| 404589.Anae109_0998 | (PF01844) | ||||
| 404589.Anae109_2264 | (PF00012) | ||||
| 404589.Anae109_0696 | (PF13432) | ||||
| 404589.Anae109_1586 | (PF14721) | ||||
| 404589.Anae109_4151 | (PF13492) | ||||
| 404589.Anae109_3618 | (PF09861) | ||||
| 404589.Anae109_3052 | (PF01814) | ||||
| 404589.Anae109_3504 | (PF01814) | ||||
| 404589.Anae109_2900 | (PF01844) | ||||
| 404589.Anae109_3428 | (PF13432) | ||||
| 404589.Anae109_2682 | (PF13432) | ||||
| 404589.Anae109_4144 | (PF13432) | ||||
| 404589.Anae109_4418 | (PF09752) | ||||
| 404589.Anae109_2114 | (PF00477) | ||||
| 404589.Anae109_2022 | (PF00012) | ||||
| 404589.Anae109_2947 | (PF03169) | ||||
| 404589.Anae109_4174 | (PF13432) | ||||
| 404589.Anae109_0411 | (PF01844) | ||||
| 404589.Anae109_3072 | (PF02446) | ||||
| 404589.Anae109_2389 | (PF02358) | ||||
| 404589.Anae109_3814 | (PF13432) | ||||
| 404589.Anae109_2653 | PF00154 | ||||
| 404589.Anae109_2650 | (PF01844) | ||||
| 404589.Anae109_1607 | (PF01814) | ||||
| 404589.Anae109_0641 | (PF00012) | ||||
| 404589.Anae109_0065 | PF09764 | ||||
| 404589.Anae109_0264 | (PF03169) | ||||
| 404589.Anae109_3398 | (PF13432) | ||||
| 404589.Anae109_3930 | (PF13432) | ||||
| 404589.Anae109_3750 | PF00154 | ||||
| 404589.Anae109_1383 | (PF00477) | ||||
| 404589.Anae109_4119 | (PF01814) | ||||
| 404589.Anae109_4288 | (PF03982) | ||||
| 404589.Anae109_3012 | (PF00012) | ||||
| 404589.Anae109_3344 | (PF04143) | ||||
| 404589.Anae109_2523 | (PF01597) | ||||
| 404589.Anae109_1131 | (PF02358) | ||||
| 404589.Anae109_1523 | (PF00012) | ||||
| 404589.Anae109_3898 | (PF01814) | ||||
| 404589.Anae109_3001 | (PF13492) | ||||
| 404589.Anae109_3134 | (PF02163) | ||||
| 404589.Anae109_2998 | (PF01814) | ||||
| 404589.Anae109_3910 | (PF02954) | ||||
| 404589.Anae109_2770 | PF04406 | ||||
| 404589.Anae109_1272 | (PF00012) | ||||
| 404589.Anae109_1471 | (PF13432) | ||||
| 404589.Anae109_0456 | PF00154 | ||||
| 404589.Anae109_0455 | (PF07766) | ||||
| 404589.Anae109_0450 | (PF01844) | ||||
| 404589.Anae109_0459 | (PF14791) | ||||
| 404589.Anae109_3103 | (PF13492) | ||||
| 404589.Anae109_3691 | (PF04519) | ||||
| 404589.Anae109_3692 | (PF04519) | ||||
| 404589.Anae109_1648 | (PF01814) | ||||
| 404589.Anae109_1516 | (PF01844) | ||||
| 404589.Anae109_4013 | (PF13432) | ||||
| 404589.Anae109_0332 | (PF03169) | ||||
| 404589.Anae109_3592 | (PF13432) | ||||
| 404589.Anae109_3685 | (PF13432) | ||||
| 404589.Anae109_3758 | (PF00025) | ||||
| 404589.Anae109_4064 | (PF13432) | ||||
| 404589.Anae109_1213 | (PF09861) | ||||
| 404589.Anae109_1212 | (PF03015) | ||||
| 404589.Anae109_0618 | (PF01814) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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