Metamenu

Effective results for Clostridium sp. L2-50 (eggnog40)

Summary

Number of putative secreted proteins: 80
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 80 proteins (2 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411489.CLOL250_01629(PF02368) (PF13306)ER
411489.CLOL250_02671PF00641ER
411489.CLOL250_00917(PF13173)mitochondrial; (mitochondrial)
411489.CLOL250_00754(PF01554)ER
411489.CLOL250_00753(PF13306)ER; (ER)
411489.CLOL250_02668(PF13306)ER
411489.CLOL250_02664(PF13306)(ER)
411489.CLOL250_02693(PF02368)ER
411489.CLOL250_02696(PF01554)ER; (ER)
411489.CLOL250_02569(PF02368)ER
411489.CLOL250_00995(PF02368)ER
411489.CLOL250_01923(PF00209)ER; (ER)
411489.CLOL250_00034(PF06541)ER
411489.CLOL250_01551(PF00209)(ER)
411489.CLOL250_01942(PF01554)ER
411489.CLOL250_00788(PF01554)(ER)
411489.CLOL250_00015(PF02368)ER
411489.CLOL250_02630(PF05698)ER
411489.CLOL250_02631(PF05698)ER
411489.CLOL250_01767(PF13173)(mitochondrial)
411489.CLOL250_02096(PF13173)(mitochondrial)
411489.CLOL250_01371(PF02368)ER
411489.CLOL250_02339(PF01554)ER
411489.CLOL250_02338(PF13306)ER
411489.CLOL250_02332(PF06541)ER
411489.CLOL250_02337(PF13306)ER
411489.CLOL250_00773(PF02368)(mitochondrial)
411489.CLOL250_00771(PF02368)ER; (mitochondrial)
411489.CLOL250_00770(PF02368)ER
411489.CLOL250_02048(PF13306)ER
411489.CLOL250_02708(PF13173)(mitochondrial)
411489.CLOL250_00686(PF04422) (PF04432)
411489.CLOL250_02380(PF00209)(ER)
411489.CLOL250_01043(PF02368)(ER)
411489.CLOL250_00691(PF04422) (PF04432)
411489.CLOL250_00855(PF01554)(ER)
411489.CLOL250_02091(PF01554)(plastid)
411489.CLOL250_00637(PF13173)
411489.CLOL250_02705(PF13173)not used
411489.CLOL250_01087(PF01554)
411489.CLOL250_01085(PF01554)
411489.CLOL250_01395(PF05698)
411489.CLOL250_01892(PF13173)
411489.CLOL250_02496(PF12646)
411489.CLOL250_00652(PF02368)
411489.CLOL250_02469(PF00209)
411489.CLOL250_01042(PF02938)
411489.CLOL250_02252(PF01554)
411489.CLOL250_01078(PF13173)
411489.CLOL250_00403(PF02368)
411489.CLOL250_00402(PF02368)
411489.CLOL250_02369(PF06541)
411489.CLOL250_01048(PF01554)
411489.CLOL250_00060(PF01554)
411489.CLOL250_00664(PF01554)
411489.CLOL250_01063(PF01554)
411489.CLOL250_01449(PF02938)
411489.CLOL250_02698(PF01554)
411489.CLOL250_01121(PF02368)
411489.CLOL250_01486(PF12224)
411489.CLOL250_02544(PF12224)
411489.CLOL250_01495(PF13306)
411489.CLOL250_01552(PF01554)
411489.CLOL250_01319(PF01554)
411489.CLOL250_01791(PF13173)
411489.CLOL250_01171(PF14078)
411489.CLOL250_01943(PF01554)
411489.CLOL250_00787(PF00209)
411489.CLOL250_00789(PF03266)
411489.CLOL250_01999(PF08123)
411489.CLOL250_00007(PF14938)
411489.CLOL250_02386(PF01554)
411489.CLOL250_00366(PF13306)
411489.CLOL250_01218(PF12224)
411489.CLOL250_01691PF15636
411489.CLOL250_02981(PF01554)
411489.CLOL250_02183(PF13306)
411489.CLOL250_02603(PF13173)
411489.CLOL250_01226(PF14078)
411489.CLOL250_02191(PF01991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================