Effective results for Ammonifex degensii KC4 (eggnog40)

Summary

Number of putative secreted proteins: 60
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 60 proteins (5 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
429009.Adeg_0491				(PF07282)	ER
429009.Adeg_1606				(PF07282)	ER
429009.Adeg_1988				(PF07282)	(mitochondrial)
429009.Adeg_0655				(PF09419)	ER
429009.Adeg_1133				(PF07282)	(mitochondrial)
429009.Adeg_0154				(PF07282)	(mitochondrial)
429009.Adeg_1560				(PF07282)	(mitochondrial)
429009.Adeg_1315				(PF07282)	(mitochondrial); mitochondrial
429009.Adeg_0940				(PF03266)	(mitochondrial)
429009.Adeg_1426				(PF13187)	(ER); ER
429009.Adeg_0820				(PF08843)	(plastid)
429009.Adeg_1745				PF13513	(ER)
429009.Adeg_0342				(PF13187)	(ER)
429009.Adeg_0410				(PF07282)	(mitochondrial)
429009.Adeg_0866				(PF07282)	(ER)
429009.Adeg_0498				(PF07282)
429009.Adeg_1051				PF16760
429009.Adeg_0271				(PF07282)
429009.Adeg_1600				(PF10143)
429009.Adeg_1609				(PF01946)
429009.Adeg_0809				(PF08843)
429009.Adeg_1817				(PF07282)
429009.Adeg_0819				(PF07282)
429009.Adeg_1078				(PF13187)
429009.Adeg_0389				(PF07282)
429009.Adeg_0627				(PF07282)
429009.Adeg_1714				(PF07282)
429009.Adeg_1935				(PF07282)
429009.Adeg_1069				(PF07282)
429009.Adeg_0523				(PF07282)
429009.Adeg_0290				(PF02256)
429009.Adeg_0745				(PF07282)
429009.Adeg_1001				(PF13187)
429009.Adeg_1130				PF00688
429009.Adeg_0832				PF16760
429009.Adeg_0182				(PF10143)
429009.Adeg_1689				(PF07282)
429009.Adeg_1117				(PF07282)
429009.Adeg_0911				(PF13187)
429009.Adeg_0798				(PF08843)
429009.Adeg_0989				PF16575
429009.Adeg_1781				(PF02256)
429009.Adeg_1783				(PF02256)
429009.Adeg_0421				(PF01946)
429009.Adeg_1405				(PF07282)
429009.Adeg_1404				(PF07282)
429009.Adeg_0132				(PF07282)
429009.Adeg_0123				(PF07282)
429009.Adeg_0448				(PF07282)
429009.Adeg_0334				(PF13187)
429009.Adeg_1081				(PF13187)
429009.Adeg_1333				(PF13187)
429009.Adeg_1425				(PF13187)
429009.Adeg_0925				(PF13187)
429009.Adeg_0463				(PF07282)
429009.Adeg_0667				(PF07282)
429009.Adeg_0485				(PF07282)
429009.Adeg_0268				(PF08843)
429009.Adeg_0717				(PF08843)
429009.Adeg_0909				(PF13187)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================