Metamenu

Effective results for Clavibacter michiganensis subsp. michiganensis NCPPB 382 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 17 proteins (1 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
443906.CMM_0043(PF03211)(ER); ER
443906.CMM_0051(PF03211)mitochondrial
443906.pCM2_0007(PF07510)ER
443906.CMM_0935(PF11196)ER
443906.CMM_1065(PF07510)(ER)
443906.pCM1_0018(PF07510)ER
443906.pCM1_0020PF01357ER; (ER)
443906.CMM_0936(PF11196)ER
443906.CMM_2050(PF07510)ER
443906.CMM_0063(PF07510)(mitochondrial)
443906.CMM_0768(PF10013)
443906.CMM_2382(PF01823)
443906.CMM_2958(PF05495)
443906.CMM_2290(PF02945)
443906.CMM_2460(PF10544)
443906.CMM_2207(PF10544)
443906.CMM_2206(PF14311)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================