Metamenu

Effective results for Lysinibacillus sphaericus C3-41 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 94 proteins (8 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
444177.Bsph_0166(PF00395)ER
444177.Bsph_0518(PF00395)ER
444177.Bsph_1125(PF00395)ER
444177.Bsph_4449(PF01497)ER; (ER)
444177.Bsph_1838(PF00395)mitochondrial; (mitochondrial)
444177.Bsph_1833(PF01497)ER
444177.Bsph_3502(PF00395)ER
444177.Bsph_2306(PF08245)(mitochondrial)
444177.Bsph_3091(PF00395)ER
444177.Bsph_2915(PF01497)ER
444177.Bsph_1486(PF04127)ER; (ER)
444177.Bsph_3229PF13127ER
444177.Bsph_0788(PF00395)ER
444177.Bsph_2892(PF00395)ER
444177.Bsph_1267(PF01497)(ER)
444177.Bsph_1265(PF00395)ER
444177.Bsph_4361(PF01497)ER
444177.Bsph_1040(PF00395)ER
444177.Bsph_1041(PF00395)ER; (ER)
444177.Bsph_2067PF13127ER
444177.Bsph_4486(PF01497)ER
444177.Bsph_1849(PF00395)(ER)
444177.Bsph_4341(PF00395)ER
444177.Bsph_3350(PF00395)ER
444177.Bsph_1123(PF00395)ER
444177.Bsph_1122(PF00395)ER
444177.Bsph_2741(PF00395)(mitochondrial)
444177.Bsph_3973(PF00395)ER
444177.Bsph_0136(PF01497)ER
444177.Bsph_0708(PF01497)ER
444177.Bsph_0706(PF01497)(ER); ER
444177.Bsph_0700(PF01497)(ER)
444177.Bsph_0147(PF00395)mitochondrial; (mitochondrial)
444177.Bsph_4400(PF01497)ER
444177.Bsph_1115PF03318(mitochondrial)
444177.Bsph_2822PF03318ER
444177.Bsph_4269(PF12606)ER; not used
444177.Bsph_1071PF03318(plastid)
444177.Bsph_2088(PF00395)(mitochondrial)
444177.Bsph_3708(PF00395)plastid
444177.Bsph_3052(PF00395)(mitochondrial)
444177.Bsph_3195PF03318(ER)
444177.Bsph_0988(PF01497)
444177.Bsph_1587(PF01765)not used
444177.Bsph_1586(PF01765)
444177.Bsph_0172(PF11563)
444177.Bsph_3647(PF06941)
444177.Bsph_0698(PF00395)
444177.Bsph_0349(PF00395)
444177.Bsph_4205(PF08245)
444177.Bsph_1124(PF00395)
444177.Bsph_2303(PF08245)
444177.Bsph_2305(PF08245)
444177.Bsph_4312(PF08245)
444177.Bsph_1671(PF01497)
444177.Bsph_2076PF02002
444177.Bsph_2795(PF11563)
444177.Bsph_0476(PF16472)
444177.Bsph_2656(PF12368)
444177.Bsph_4487(PF01497)
444177.Bsph_4578(PF10609)
444177.Bsph_2504(PF00395)
444177.Bsph_3326(PF10609)
444177.Bsph_2916(PF01497)
444177.Bsph_0484PF02257
444177.Bsph_0646(PF16472)
444177.Bsph_0645(PF16472)
444177.Bsph_1990(PF00395)
444177.Bsph_4188(PF01497)
444177.Bsph_0852(PF11563)
444177.Bsph_1433(PF08245)
444177.Bsph_1432(PF08245)
444177.Bsph_2165(PF03630)
444177.Bsph_1406(PF08245)
444177.Bsph_2195(PF04127)
444177.Bsph_3974(PF00395)
444177.Bsph_1830(PF03059)
444177.Bsph_4736(PF12638)
444177.Bsph_1896(PF00395)
444177.Bsph_3962(PF08245)
444177.Bsph_3961(PF08245)
444177.Bsph_0556(PF01497)
444177.Bsph_0707(PF01497)
444177.Bsph_0702(PF01497)
444177.Bsph_0703(PF01497)
444177.Bsph_0701(PF01497)
444177.Bsph_0388(PF12368)
444177.Bsph_0965(PF01497)
444177.Bsph_4657(PF11563)
444177.Bsph_1281(PF08245)
444177.Bsph_1118(PF00395)
444177.Bsph_1572(PF10609)
444177.Bsph_1753(PF06941)
444177.Bsph_2718(PF01497)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================