Metamenu

Effective results for Brachybacterium faecium DSM 4810 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 18 proteins (0 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
446465.Bfae_01920(PF11070)ER
446465.Bfae_09240(PF01128)(ER)
446465.Bfae_19510(PF00648)mitochondrial
446465.Bfae_28330(PF04886)(plastid)
446465.Bfae_09260(PF01128)(ER)
446465.Bfae_26410(PF01128)(mitochondrial)
446465.Bfae_25900(PF11523)
446465.Bfae_13920(PF13367)
446465.Bfae_27140(PF03015)
446465.Bfae_03980(PF07745)
446465.Bfae_28020(PF16387)
446465.Bfae_03730(PF14721)
446465.Bfae_03130(PF00648)
446465.Bfae_04110(PF07745)
446465.Bfae_04240(PF13367)
446465.Bfae_04100(PF07745)
446465.Bfae_30260(PF10462)
446465.Bfae_12520(PF13367)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================