Metamenu

Effective results for Sanguibacter keddieii DSM 10542 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
446469.Sked_26250(PF06662)ER
446469.Sked_14250(PF01301)(mitochondrial); (plastid)
446469.Sked_06550(PF02449)(mitochondrial)
446469.Sked_33200(PF02449)
446469.Sked_37620(PF14938)
446469.Sked_05560(PF05448)
446469.Sked_13150(PF01301)
446469.Sked_10120(PF02449)
446469.Sked_37160(PF01301)
446469.Sked_11630(PF02449)
446469.Sked_02970PF04587
446469.Sked_34520(PF02449)
446469.Sked_19450(PF03015)
446469.Sked_01220(PF05448)
446469.Sked_33120(PF05448)
446469.Sked_03930(PF02449)
446469.Sked_06640(PF02449)
446469.Sked_19860(PF02224)
446469.Sked_27720(PF01301)
446469.Sked_27540(PF02178)
446469.Sked_22250(PF02224)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================