Metamenu

Effective results for Xylanimonas cellulosilytica DSM 15894 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
446471.Xcel_0861(PF03995)ER
446471.Xcel_1598(PF09683)ER
446471.Xcel_0812(PF03995)ER
446471.Xcel_0025(PF03995)ER
446471.Xcel_0809(PF03995)plastid
446471.Xcel_3076(PF05495)
446471.Xcel_2980(PF03703)
446471.Xcel_2981(PF03703)
446471.Xcel_2982(PF03703)
446471.Xcel_0437PF08213not used
446471.Xcel_2663(PF01229)
446471.Xcel_0370(PF01229)
446471.Xcel_0154(PF03703)
446471.Xcel_2081(PF03703)
446471.Xcel_2080(PF03703)
446471.Xcel_2979(PF03703)
446471.Xcel_2360(PF03703)
446471.Xcel_0114(PF01229)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================