Effective results for Clostridium perfringens NCTC 8239 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 63 proteins (13 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
451757.AC7_1539				(PF13402) (PF00754) (PF16403)	ER
451757.AC7_0321				(PF03644) (PF00754)	ER
451757.AC7_1062				(PF13402) (PF00754) (PF16403)	(ER)
451757.AC7_1491				PF07555 (PF00754)	ER
451757.AC7_0849				(PF03644) (PF00754)	ER
451757.AC7_1537				PF07555 (PF00754)	ER
451757.AC7_0038				PF00882 (PF01477)	ER
451757.AC7_0906				PF07555 (PF00754)	mitochondrial; (mitochondrial)
451757.AC7_0206				PF07555 (PF00754)	ER; (ER)
451757.AC7_0891				(PF00754)	ER; (mitochondrial)
451757.AC7_0405				(PF00754)	ER
451757.AC7_2900				(PF11070)	ER
451757.AC7_1074				(PF16403)	ER
451757.AC7_1492				(PF00754)	(mitochondrial)
451757.AC7_2130				(PF00754)	ER
451757.AC7_1621				PF12135 (PF00754)	(ER)
451757.AC7_1529				(PF00754)	ER
451757.AC7_0138				(PF05738)	ER
451757.AC7_2673				(PF00163)	mitochondrial
451757.AC7_1296				(PF00754)	(ER); ER
451757.AC7_1294				(PF01902)	(mitochondrial); mitochondrial
451757.AC7_0169				(PF05738)	ER
451757.AC7_0800				(PF05738)	ER
451757.AC7_0803				(PF05738)	ER; (ER)
451757.AC7_2692				(PF00163)	mitochondrial
451757.AC7_0170				(PF05738)	ER
451757.AC7_1776				(PF14566)	ER
451757.AC7_0140				(PF05738)	ER
451757.AC7_0559				(PF00754)	ER
451757.AC7_0411				(PF02915)
451757.AC7_0091				(PF02915)
451757.AC7_1852				(PF06968)
451757.AC7_1450				(PF06777)
451757.AC7_2484				(PF01633)
451757.AC7_2482				(PF01633)
451757.AC7_0953				PF13859
451757.AC7_0880				(PF02915)
451757.AC7_0088				(PF06968)
451757.AC7_1590				(PF02915)
451757.AC7_2360				(PF12513)
451757.AC7_2611				PF00882
451757.AC7_1064				(PF02915)
451757.AC7_1640				PF00882
451757.AC7_0137				(PF05738)
451757.AC7_1713				(PF00754)
451757.AC7_0717				(PF02915)
451757.AC7_1850				PF12646
451757.AC7_2431				(PF15610)
451757.AC7_0120				(PF06968)
451757.AC7_2642				(PF02915)
451757.AC7_0009				(PF07892)
451757.AC7_0641				(PF01633)
451757.AC7_0738				PF00882
451757.AC7_1282				(PF01633)
451757.AC7_2890				(PF12638)
451757.AC7_0755				PF06467	not used
451757.AC7_0756				(PF01902)
451757.AC7_0692				(PF00754)
451757.AC7_2868				PF12646
451757.AC7_1797				(PF06968)
451757.AC7_2852				(PF07892)
451757.AC7_1895				(PF01991)
451757.AC7_0150				(PF02915)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================