Effective results for Desulfovibrio sp. 3_1_syn3 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 46 proteins (11 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
457398.HMPREF0326_01873				(PF00939)	ER
457398.HMPREF0326_02216				(PF13534)	(mitochondrial)
457398.HMPREF0326_01590				(PF01501)	mitochondrial; (mitochondrial)
457398.HMPREF0326_00237				PF01591	mitochondrial
457398.HMPREF0326_01612				(PF00939)	ER; (ER)
457398.HMPREF0326_02721				(PF01697)	(mitochondrial)
457398.HMPREF0326_02536				(PF10571)	mitochondrial
457398.HMPREF0326_02941				(PF00939)	ER
457398.HMPREF0326_02300				(PF00165)	(mitochondrial)
457398.HMPREF0326_01913				(PF13534)	(plastid)
457398.HMPREF0326_01934				PF13332	(plastid)
457398.HMPREF0326_01283				(PF06968)	(plastid)
457398.HMPREF0326_00005				PF13332	(plastid)
457398.HMPREF0326_02339				(PF06968)
457398.HMPREF0326_03246				PF13332	not used
457398.HMPREF0326_03245				PF13332	not used
457398.HMPREF0326_01005				(PF03162)
457398.HMPREF0326_00502				(PF06968)
457398.HMPREF0326_01936				PF13332
457398.HMPREF0326_00537				(PF01501)
457398.HMPREF0326_00155				(PF00939)
457398.HMPREF0326_02375				(PF02516)
457398.HMPREF0326_01942				PF13332
457398.HMPREF0326_01611				(PF05935)
457398.HMPREF0326_01615				(PF05935)
457398.HMPREF0326_03149				(PF13534)
457398.HMPREF0326_01952				(PF12437)
457398.HMPREF0326_00956				(PF00939)
457398.HMPREF0326_00166				(PF13534)
457398.HMPREF0326_03235				PF13332	not used
457398.HMPREF0326_00941				(PF13534)
457398.HMPREF0326_03224				(PF03432)	not used
457398.HMPREF0326_02995				(PF01501)
457398.HMPREF0326_02285				(PF05693)
457398.HMPREF0326_00296				(PF01969)
457398.HMPREF0326_00297				(PF01969)
457398.HMPREF0326_02675				(PF03432)
457398.HMPREF0326_03207				(PF03432)	not used
457398.HMPREF0326_03202				PF13332	not used
457398.HMPREF0326_00466				PF13513
457398.HMPREF0326_02312				(PF06968)
457398.HMPREF0326_02410				(PF03432)
457398.HMPREF0326_02411				(PF03432)
457398.HMPREF0326_00929				(PF13534)
457398.HMPREF0326_01784				(PF12437)
457398.HMPREF0326_00441				PF06990

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================