Effective results for Streptococcus gordonii str. Challis substr. CH1 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 25 proteins (2 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
467705.SGO_0296				(PF03083)	ER
467705.SGO_0970				(PF00344)	ER
467705.SGO_0162				(PF03577)	ER
467705.SGO_1165			+		ER
467705.SGO_1700			+		ER; (ER)
467705.SGO_0002			+		mitochondrial; (mitochondrial)
467705.SGO_1178			+		ER
467705.SGO_0721				(PF03577)	ER
467705.SGO_0724				(PF03577)	ER
467705.SGO_1740				(PF03083)	(ER)
467705.SGO_0825			+		ER
467705.SGO_1463			+		ER
467705.SGO_0600			+		(mitochondrial)
467705.SGO_0112			+		ER
467705.SGO_1063			+		ER
467705.SGO_1651			+		ER
467705.SGO_2013				(PF05257)	ER
467705.SGO_0137			+		mitochondrial; (mitochondrial)
467705.SGO_1860			+		ER; (ER)
467705.SGO_1918			+		ER
467705.SGO_2107				(PF05257)	ER
467705.SGO_0586			+		ER
467705.SGO_0888			+		ER
467705.SGO_0086			+		ER
467705.SGO_1932				PF10296	ER
467705.SGO_2028				PF02916	(ER)
467705.SGO_0212				(PF05257)	ER
467705.SGO_1583			+		ER
467705.SGO_1585			+		ER
467705.SGO_1928			+		(mitochondrial)
467705.SGO_0203			+		(ER)
467705.SGO_1313			+		ER
467705.SGO_1546			+		ER
467705.SGO_2094				(PF05257)	ER
467705.SGO_0316				(PF06280)	(ER)
467705.SGO_1377			+		(ER); ER
467705.SGO_1379			+		(ER)
467705.SGO_0566				(PF06280)	ER
467705.SGO_1965				(PF00344)	mitochondrial
467705.SGO_0458			+		ER
467705.SGO_0801			+		(ER)
467705.SGO_1806				(PF07837) (PF02971)
467705.SGO_1854			+		(mitochondrial)
467705.SGO_0317				(PF06280)	(ER)
467705.SGO_1966			+		(mitochondrial)
467705.SGO_0809			+
467705.SGO_0021			+
467705.SGO_0585			+
467705.SGO_1234			+
467705.SGO_0579			+
467705.SGO_1687			+
467705.SGO_0878			+
467705.SGO_0358			+
467705.SGO_2040			+
467705.SGO_1452			+
467705.SGO_0434				(PF02938)
467705.SGO_0942			+
467705.SGO_0113			+
467705.SGO_1395			+
467705.SGO_1068			+
467705.SGO_2060				(PF02938)
467705.SGO_0126			+
467705.SGO_1094			+
467705.SGO_1278				(PF09359)
467705.SGO_1279				(PF09359)
467705.SGO_1388			+
467705.SGO_1389			+
467705.SGO_0719			+
467705.SGO_0626			+
467705.SGO_0408			+
467705.SGO_0092				(PF09359)
467705.SGO_0272			+
467705.SGO_0653			+
467705.SGO_1671			+
467705.SGO_0080			+
467705.SGO_0262				(PF03577)
467705.SGO_0642			+
467705.SGO_1118			+
467705.SGO_0518			+
467705.SGO_1939			+
467705.SGO_2022			+
467705.SGO_0361			+
467705.SGO_0063			+
467705.SGO_0208				(PF03644)
467705.SGO_0197			+
467705.SGO_0330				(PF09359)
467705.SGO_0680			+
467705.SGO_1484			+
467705.SGO_1834			+
467705.SGO_0230			+
467705.SGO_0228			+
467705.SGO_0221			+
467705.SGO_0035			+
467705.SGO_1782			+
467705.SGO_1960			+
467705.SGO_0675			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================