Effective results for Dethiosulfovibrio peptidovorans DSM 11002 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 30 proteins (7 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
469381.Dpep_1929				(PF04998) (PF00623)	(mitochondrial)
469381.Dpep_0508				(PF04998) (PF04565) (PF00623) (PF00562)
469381.Dpep_1348				PF03577	ER
469381.Dpep_1374				PF03577	ER
469381.Dpep_0907				(PF02415)	ER
469381.Dpep_1207				(PF01094)	ER
469381.Dpep_1857				PF03577	mitochondrial
469381.Dpep_2224				(PF01496)	mitochondrial
469381.Dpep_0616				PF03577	ER
469381.Dpep_1088				PF03577	ER
469381.Dpep_2117				(PF01813)	(mitochondrial)
469381.Dpep_1398				PF03577	ER
469381.Dpep_1560				(PF07837) (PF02971)
469381.Dpep_0220				(PF14336)	(plastid)
469381.Dpep_1928				(PF04565) (PF00562)
469381.Dpep_2220				(PF01990)	(ER)
469381.Dpep_1499				(PF07837) (PF02971)
469381.Dpep_2219				(PF16886)
469381.Dpep_0581				(PF02933)
469381.Dpep_1558				(PF04961)
469381.Dpep_2217				(PF01813)
469381.Dpep_2221				(PF01992)
469381.Dpep_1276				(PF00755)
469381.Dpep_2115				(PF16886)
469381.Dpep_2114				(PF01990)
469381.Dpep_2113				(PF01992)
469381.Dpep_2112				(PF01991)
469381.Dpep_2110				(PF01496)
469381.Dpep_1498				(PF04961)
469381.Dpep_1395				PF03577

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================