Metamenu

Effective results for Slackia heliotrinireducens DSM 20476 (eggnog40)

Summary

Number of putative secreted proteins: 171
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 171 proteins (23 high, 148 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
471855.Shel_16890(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_07590(PF00384) (PF04879) (PF01568)ER; (ER)
471855.Shel_22740(PF00384) (PF04879) (PF01568)mitochondrial
471855.Shel_27670(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_04310(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_06120(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_27730(PF00384) (PF01568)mitochondrial
471855.Shel_06820(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_05080(PF00384) (PF01568)(mitochondrial)
471855.Shel_18490(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_17920(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_05600(PF00384) (PF04879) (PF01568)(mitochondrial)
471855.Shel_07280(PF00890)(ER); (mitochondrial)
471855.Shel_24550(PF00384) (PF04879) (PF01568)
471855.Shel_14570(PF01128)(mitochondrial); mitochondrial
471855.Shel_21280(PF02361)ER
471855.Shel_21850(PF00384) (PF04879)(ER)
471855.Shel_06180(PF00037)ER
471855.Shel_16940(PF00037)(mitochondrial); plastid
471855.Shel_24340(PF05738)ER
471855.Shel_05670(PF05738)ER
471855.Shel_23180(PF00890)ER; (ER)
471855.Shel_04840(PF13518)(mitochondrial)
471855.Shel_24320(PF05738)ER
471855.Shel_20860(PF00384) (PF04879) (PF01568)
471855.Shel_18990(PF05738)ER; (ER)
471855.Shel_27410(PF00037)mitochondrial; (mitochondrial)
471855.Shel_12390(PF01128)(mitochondrial)
471855.Shel_22780(PF00037)ER
471855.Shel_27420(PF00037)ER
471855.Shel_27250(PF00384) (PF01568)(mitochondrial)
471855.Shel_11720PF02037 (PF05698) (PF05697)
471855.Shel_07310(PF00384) (PF04879) (PF01568)
471855.Shel_13390(PF13187)(mitochondrial)
471855.Shel_11420(PF05154)ER
471855.Shel_13800(PF00890)mitochondrial; (mitochondrial)
471855.Shel_27350(PF00384) (PF04879) (PF01568)
471855.Shel_26410(PF00890)(ER)
471855.Shel_16630(PF00890)ER; (ER)
471855.Shel_20800(PF12483)ER
471855.Shel_27570(PF00384) (PF01568)(mitochondrial)
471855.Shel_17130(PF00037)mitochondrial
471855.Shel_26990(PF00890)(ER); (mitochondrial)
471855.Shel_12080(PF08840)ER
471855.Shel_16980PF13240(mitochondrial)
471855.Shel_19680(PF02361)ER
471855.Shel_04940(PF05738)ER
471855.Shel_21840(PF00384) (PF01568)
471855.Shel_22480PF13240 (PF00059)
471855.Shel_22640(PF00890)(ER)
471855.Shel_06210(PF13187) (PF00037)
471855.Shel_12330(PF04991)(mitochondrial)
471855.Shel_24770(PF00890)(mitochondrial)
471855.Shel_07940(PF00384) (PF01568)
471855.Shel_22240(PF00384) (PF01568)
471855.Shel_16850(PF13187) (PF00037)
471855.Shel_04590(PF05698) (PF05697)
471855.Shel_11280(PF00384) (PF01568)
471855.Shel_06800(PF00037) (PF13534)
471855.Shel_27430(PF13187) (PF00037)
471855.Shel_06650PF13240 (PF12773)
471855.Shel_22500(PF12773)(plastid)
471855.Shel_17910(PF00037)(mitochondrial)
471855.Shel_02110(PF00384) (PF01568)
471855.Shel_02420(PF00384) (PF01568)
471855.Shel_06610(PF12773)(plastid)
471855.Shel_26360(PF06241)(mitochondrial)
471855.Shel_13870(PF00890)(mitochondrial)
471855.Shel_12400(PF01128)(mitochondrial)
471855.Shel_14490(PF04991)
471855.Shel_16960(PF00037)
471855.Shel_08870(PF02873)
471855.Shel_15040(PF13518)
471855.Shel_09830(PF00037)
471855.Shel_05610(PF00037)
471855.Shel_23020(PF14512)
471855.Shel_17410(PF00209)
471855.Shel_17770(PF00037)
471855.Shel_24390(PF00890)
471855.Shel_19470(PF01128)
471855.Shel_24080(PF02361)
471855.Shel_17790(PF13534)
471855.Shel_16420(PF12773)
471855.Shel_14540(PF04991)
471855.Shel_26720(PF08797)
471855.Shel_03870(PF00890)
471855.Shel_07290(PF00890)
471855.Shel_07360(PF00890)
471855.Shel_16430(PF14249)
471855.Shel_00730(PF02361)
471855.Shel_12690(PF00890)
471855.Shel_06170(PF13187)
471855.Shel_02520(PF00890)
471855.Shel_24190(PF00209)
471855.Shel_04200(PF00890)
471855.Shel_00580(PF13187)
471855.Shel_01500(PF05154)
471855.Shel_06340(PF13534)
471855.Shel_09520(PF08840)
471855.Shel_25020(PF00890)
471855.Shel_05870(PF13518)
471855.Shel_11100(PF02361)
471855.Shel_08160(PF05738)
471855.Shel_05650(PF05738)
471855.Shel_10500PF13240
471855.Shel_16590(PF13534)
471855.Shel_14510(PF13518)
471855.Shel_05220(PF00037)
471855.Shel_26200PF13240
471855.Shel_03240(PF13518)
471855.Shel_12800(PF02361)
471855.Shel_23760(PF08797)
471855.Shel_27500(PF00037)
471855.Shel_28040PF13240
471855.Shel_16470(PF00209)
471855.Shel_23540PF13240
471855.Shel_24230(PF14512)
471855.Shel_12380(PF04991)
471855.Shel_23150(PF02361)
471855.Shel_12630(PF00890)
471855.Shel_03720(PF00890)
471855.Shel_03140(PF00890)
471855.Shel_07260(PF00890)
471855.Shel_03780PF13240
471855.Shel_02760(PF13151)
471855.Shel_01220PF13240
471855.Shel_03360PF11781
471855.Shel_18720(PF01885)
471855.Shel_20940(PF04961)
471855.Shel_01430PF13240
471855.Shel_17260(PF13151)
471855.Shel_27130PF13240
471855.Shel_18390(PF13187)
471855.Shel_08520(PF02026)
471855.Shel_21970PF13240
471855.Shel_24670(PF13187)
471855.Shel_22530PF13240
471855.Shel_16720(PF00958)
471855.Shel_02160PF13240
471855.Shel_16530(PF00037)
471855.Shel_04510(PF01885)
471855.Shel_02170PF13240
471855.Shel_15080(PF02873)
471855.Shel_02910(PF16565)
471855.Shel_24900(PF04961)
471855.Shel_11760(PF12773)
471855.Shel_13450(PF00037)
471855.Shel_12980PF13240
471855.Shel_04990(PF13534)
471855.Shel_06660PF13240
471855.Shel_27580(PF00037)
471855.Shel_04280(PF00890)
471855.Shel_26350PF13240
471855.Shel_13900PF13240
471855.Shel_21340(PF00209)
471855.Shel_22700(PF00209)
471855.Shel_23650(PF05154)
471855.Shel_07520(PF02361)
471855.Shel_19190(PF00958)
471855.Shel_04540PF13240
471855.Shel_14620(PF01128)
471855.Shel_25720(PF02361)
471855.Shel_03880(PF00037)
471855.Shel_01800(PF08797)
471855.Shel_26940(PF00890)
471855.Shel_17750(PF13534)
471855.Shel_02630(PF00037)not used
471855.Shel_22710(PF00037)
471855.Shel_19690PF06911
471855.Shel_01650(PF13518)
471855.Shel_20720(PF05698)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================