Effective results for Proteus penneri ATCC 35198 (eggnog40)
Summary
Number of putative secreted proteins: 315
- Predicted by T4SEpre: 189
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 170 proteins (36 high, 134 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 471881.PROPEN_03849 | + | PF00577 | mitochondrial; (mitochondrial) | ||
| 471881.PROPEN_02466 | + | ER | |||
| 471881.PROPEN_04089 | (PF00345) | ER | |||
| 471881.PROPEN_04159 | (PF08496) | ER | |||
| 471881.PROPEN_00438 | + | ER | |||
| 471881.PROPEN_02279 | (PF02275) | ER | |||
| 471881.PROPEN_03652 | (PF00345) | ER | |||
| 471881.PROPEN_03656 | PF00577 | mitochondrial | |||
| 471881.PROPEN_00242 | + | (ER); (mitochondrial) | |||
| 471881.PROPEN_00760 | (PF04127) | (mitochondrial) | |||
| 471881.PROPEN_01104 | + | ER | |||
| 471881.PROPEN_03862 | (PF00384) | (ER) | |||
| 471881.PROPEN_02733 | + | (ER) | |||
| 471881.PROPEN_01107 | + | ER | |||
| 471881.PROPEN_04542 | + | ER | |||
| 471881.PROPEN_00066 | (PF00959) | (mitochondrial) | |||
| 471881.PROPEN_03391 | (PF00573) | (mitochondrial) | |||
| 471881.PROPEN_03805 | (PF00224) | (mitochondrial) | |||
| 471881.PROPEN_02531 | (PF00345) | ER | |||
| 471881.PROPEN_02530 | PF00577 | ER | |||
| 471881.PROPEN_01635 | (PF00771) | (mitochondrial) | |||
| 471881.PROPEN_00891 | (PF03255) | (mitochondrial) | |||
| 471881.PROPEN_00382 | (PF00345) | ER | |||
| 471881.PROPEN_03231 | + | ER | |||
| 471881.PROPEN_03658 | + | ER | |||
| 471881.PROPEN_02299 | (PF02884) | ER | |||
| 471881.PROPEN_02746 | + | (mitochondrial) | |||
| 471881.PROPEN_01623 | + | ER | |||
| 471881.PROPEN_04108 | + | mitochondrial; ER | |||
| 471881.PROPEN_04586 | (PF11940) | (mitochondrial) | |||
| 471881.PROPEN_01366 | + | ER | |||
| 471881.PROPEN_03220 | + | ER | |||
| 471881.PROPEN_02513 | (PF01148) | ER | |||
| 471881.PROPEN_04162 | + | ER | |||
| 471881.PROPEN_00909 | (PF01148) | ER | |||
| 471881.PROPEN_03450 | + | ER | |||
| 471881.PROPEN_03696 | (PF00345) | ER | |||
| 471881.PROPEN_03963 | (PF00384) | (mitochondrial) | |||
| 471881.PROPEN_00840 | + | ER | |||
| 471881.PROPEN_00334 | + | ER | |||
| 471881.PROPEN_02698 | (PF02622) | ER | |||
| 471881.PROPEN_03715 | + | mitochondrial | |||
| 471881.PROPEN_02363 | + | (mitochondrial) | |||
| 471881.PROPEN_02789 | + | ER | |||
| 471881.PROPEN_04851 | + | ER | |||
| 471881.PROPEN_04075 | PF00577 | (mitochondrial) | |||
| 471881.PROPEN_03311 | (PF05524) | mitochondrial | |||
| 471881.PROPEN_01309 | + | ER | |||
| 471881.PROPEN_01948 | (PF00345) | ER; (ER) | |||
| 471881.PROPEN_00420 | (PF00345) | ER | |||
| 471881.PROPEN_02127 | + | ER | |||
| 471881.PROPEN_02208 | PF13332 | (mitochondrial) | |||
| 471881.PROPEN_04515 | + | ER | |||
| 471881.PROPEN_00147 | + | mitochondrial; (mitochondrial) | |||
| 471881.PROPEN_04192 | + | ER | |||
| 471881.PROPEN_04199 | + | (mitochondrial) | |||
| 471881.PROPEN_03189 | + | ER | |||
| 471881.PROPEN_02920 | + | ER | |||
| 471881.PROPEN_01941 | + | ER | |||
| 471881.PROPEN_02580 | (PF00562) | mitochondrial | |||
| 471881.PROPEN_02680 | + | ER | |||
| 471881.PROPEN_01798 | + | ER | |||
| 471881.PROPEN_00421 | PF00577 | ER | |||
| 471881.PROPEN_00355 | + | ER | |||
| 471881.PROPEN_04721 | PF00577 | mitochondrial | |||
| 471881.PROPEN_04722 | PF00577 | (ER) | |||
| 471881.PROPEN_04725 | (PF00345) | ER | |||
| 471881.PROPEN_01757 | (PF00384) | (mitochondrial) | |||
| 471881.PROPEN_03469 | + | (ER) | |||
| 471881.PROPEN_00417 | (PF01053) | (mitochondrial) | |||
| 471881.PROPEN_00524 | PF00577 | (ER) | |||
| 471881.PROPEN_00470 | (PF06315) | (ER) | |||
| 471881.PROPEN_00380 | + | PF00577 | |||
| 471881.PROPEN_02775 | (PF00345) | (mitochondrial) | |||
| 471881.PROPEN_00908 | (PF01148) | (ER) | |||
| 471881.PROPEN_03698 | + | PF00577 | |||
| 471881.PROPEN_03592 | + | (mitochondrial) | |||
| 471881.PROPEN_03850 | + | PF00577 | |||
| 471881.PROPEN_03092 | + | (plastid) | |||
| 471881.PROPEN_01582 | + | plastid | |||
| 471881.PROPEN_03412 | + | (mitochondrial) | |||
| 471881.PROPEN_01994 | (PF00959) | (mitochondrial); not used | |||
| 471881.PROPEN_04076 | PF00577 (PF00345) | ||||
| 471881.PROPEN_00222 | + | plastid | |||
| 471881.PROPEN_04699 | + | (PF01268) | |||
| 471881.PROPEN_03081 | (PF01053) | (mitochondrial) | |||
| 471881.PROPEN_03338 | + | (PF00384) | |||
| 471881.PROPEN_04995 | + | (mitochondrial) | |||
| 471881.PROPEN_00366 | (PF03313) | (mitochondrial) | |||
| 471881.PROPEN_04853 | + | (ER) | |||
| 471881.PROPEN_02913 | (PF03313) | (mitochondrial) | |||
| 471881.PROPEN_02912 | (PF03313) | (mitochondrial) | |||
| 471881.PROPEN_03840 | + | ||||
| 471881.PROPEN_02868 | (PF00384) | ||||
| 471881.PROPEN_02867 | (PF00384) | ||||
| 471881.PROPEN_02008 | + | ||||
| 471881.PROPEN_01011 | (PF00521) | ||||
| 471881.PROPEN_01010 | (PF00521) | ||||
| 471881.PROPEN_01347 | (PF00384) | ||||
| 471881.PROPEN_01348 | (PF00384) | ||||
| 471881.PROPEN_00980 | (PF00136) | ||||
| 471881.PROPEN_04158 | (PF08496) | ||||
| 471881.PROPEN_00230 | (PF03538) | ||||
| 471881.PROPEN_04710 | + | ||||
| 471881.PROPEN_00009 | + | not used | |||
| 471881.PROPEN_02213 | + | ||||
| 471881.PROPEN_03012 | + | ||||
| 471881.PROPEN_03019 | + | ||||
| 471881.PROPEN_02902 | (PF09370) | ||||
| 471881.PROPEN_02901 | (PF09370) | ||||
| 471881.PROPEN_02018 | + | ||||
| 471881.PROPEN_02019 | + | ||||
| 471881.PROPEN_02471 | + | ||||
| 471881.PROPEN_02493 | + | ||||
| 471881.PROPEN_02700 | (PF02622) | not used | |||
| 471881.PROPEN_01009 | (PF00521) | ||||
| 471881.PROPEN_00010 | + | not used | |||
| 471881.PROPEN_00759 | (PF04127) | ||||
| 471881.PROPEN_03655 | PF00577 | ||||
| 471881.PROPEN_03654 | PF00577 | ||||
| 471881.PROPEN_04091 | PF00577 | ||||
| 471881.PROPEN_00537 | + | ||||
| 471881.PROPEN_04700 | (PF01268) | ||||
| 471881.PROPEN_03260 | + | ||||
| 471881.PROPEN_03335 | (PF10014) | ||||
| 471881.PROPEN_03863 | (PF00384) | ||||
| 471881.PROPEN_01109 | (PF00224) | not used | |||
| 471881.PROPEN_04393 | + | ||||
| 471881.PROPEN_01728 | (PF00521) | ||||
| 471881.PROPEN_02599 | (PF04493) | ||||
| 471881.PROPEN_00416 | (PF01053) | ||||
| 471881.PROPEN_00525 | PF00577 | ||||
| 471881.PROPEN_00523 | (PF00345) | ||||
| 471881.PROPEN_00259 | + | ||||
| 471881.PROPEN_04777 | (PF01053) | ||||
| 471881.PROPEN_04776 | (PF01053) | ||||
| 471881.PROPEN_04607 | + | ||||
| 471881.PROPEN_00218 | + | ||||
| 471881.PROPEN_03700 | (PF00345) | ||||
| 471881.PROPEN_02656 | (PF06500) | not used | |||
| 471881.PROPEN_02657 | (PF06500) | ||||
| 471881.PROPEN_03924 | + | ||||
| 471881.PROPEN_03929 | + | ||||
| 471881.PROPEN_02385 | + | ||||
| 471881.PROPEN_01110 | (PF00224) | ||||
| 471881.PROPEN_01281 | + | ||||
| 471881.PROPEN_01731 | + | ||||
| 471881.PROPEN_04548 | + | ||||
| 471881.PROPEN_00644 | (PF01053) | ||||
| 471881.PROPEN_00734 | + | ||||
| 471881.PROPEN_00084 | + | ||||
| 471881.PROPEN_00267 | (PF07720) | ||||
| 471881.PROPEN_00638 | + | ||||
| 471881.PROPEN_01711 | (PF00384) | ||||
| 471881.PROPEN_01967 | + | ||||
| 471881.PROPEN_04651 | + | ||||
| 471881.PROPEN_03390 | (PF00573) | ||||
| 471881.PROPEN_00181 | + | ||||
| 471881.PROPEN_03936 | + | ||||
| 471881.PROPEN_02750 | + | ||||
| 471881.PROPEN_02658 | (PF06500) | ||||
| 471881.PROPEN_01634 | (PF00771) | ||||
| 471881.PROPEN_01633 | (PF00771) | ||||
| 471881.PROPEN_04973 | + | ||||
| 471881.PROPEN_04575 | + | ||||
| 471881.PROPEN_00892 | (PF03255) | ||||
| 471881.PROPEN_04118 | + | ||||
| 471881.PROPEN_00471 | (PF06315) | ||||
| 471881.PROPEN_04280 | + | ||||
| 471881.PROPEN_04021 | (PF03255) | ||||
| 471881.PROPEN_00277 | + | ||||
| 471881.PROPEN_04032 | + | ||||
| 471881.PROPEN_02298 | (PF02884) | ||||
| 471881.PROPEN_03900 | + | ||||
| 471881.PROPEN_04369 | + | ||||
| 471881.PROPEN_01245 | + | ||||
| 471881.PROPEN_01710 | (PF00384) | ||||
| 471881.PROPEN_02908 | + | ||||
| 471881.PROPEN_04039 | + | ||||
| 471881.PROPEN_00283 | (PF00771) | ||||
| 471881.PROPEN_00286 | (PF00771) | ||||
| 471881.PROPEN_00285 | (PF00771) | ||||
| 471881.PROPEN_00445 | (PF03313) | ||||
| 471881.PROPEN_04587 | (PF11940) | ||||
| 471881.PROPEN_04588 | (PF11940) | ||||
| 471881.PROPEN_03989 | + | ||||
| 471881.PROPEN_03648 | + | ||||
| 471881.PROPEN_03352 | (PF00384) | ||||
| 471881.PROPEN_03353 | (PF00384) | ||||
| 471881.PROPEN_03354 | (PF00384) | ||||
| 471881.PROPEN_02510 | + | ||||
| 471881.PROPEN_03734 | (PF03306) | ||||
| 471881.PROPEN_03735 | (PF03306) | ||||
| 471881.PROPEN_02600 | (PF04493) | not used | |||
| 471881.PROPEN_00998 | + | ||||
| 471881.PROPEN_01097 | + | ||||
| 471881.PROPEN_01099 | (PF05524) | ||||
| 471881.PROPEN_02776 | PF00577 | ||||
| 471881.PROPEN_04350 | + | ||||
| 471881.PROPEN_01876 | (PF05524) | ||||
| 471881.PROPEN_01875 | (PF05524) | ||||
| 471881.PROPEN_01584 | + | ||||
| 471881.PROPEN_04006 | PF00165 | ||||
| 471881.PROPEN_03583 | + | ||||
| 471881.PROPEN_03697 | PF00577 | ||||
| 471881.PROPEN_03211 | + | ||||
| 471881.PROPEN_02500 | + | ||||
| 471881.PROPEN_02888 | + | ||||
| 471881.PROPEN_01646 | + | ||||
| 471881.PROPEN_04832 | PF13332 | ||||
| 471881.PROPEN_04122 | + | ||||
| 471881.PROPEN_04018 | PF00165 | not used | |||
| 471881.PROPEN_04014 | (PF01053) | ||||
| 471881.PROPEN_04015 | (PF01053) | ||||
| 471881.PROPEN_04650 | + | ||||
| 471881.PROPEN_01178 | + | ||||
| 471881.PROPEN_03750 | (PF01195) | ||||
| 471881.PROPEN_03971 | + | ||||
| 471881.PROPEN_02402 | (PF00959) | ||||
| 471881.PROPEN_02576 | PF00687 | ||||
| 471881.PROPEN_02575 | PF00687 | ||||
| 471881.PROPEN_02579 | (PF00562) | ||||
| 471881.PROPEN_00106 | + | ||||
| 471881.PROPEN_01676 | (PF00384) | ||||
| 471881.PROPEN_00850 | + | ||||
| 471881.PROPEN_04487 | PF13332 | ||||
| 471881.PROPEN_04486 | PF13332 | ||||
| 471881.PROPEN_02105 | + | ||||
| 471881.PROPEN_04469 | (PF09330) | ||||
| 471881.PROPEN_03166 | + | ||||
| 471881.PROPEN_03898 | + | ||||
| 471881.PROPEN_03948 | (PF03945) | ||||
| 471881.PROPEN_02567 | (PF01053) | ||||
| 471881.PROPEN_02568 | (PF01053) | ||||
| 471881.PROPEN_01995 | (PF00959) | ||||
| 471881.PROPEN_02786 | PF13691 | ||||
| 471881.PROPEN_02787 | + | ||||
| 471881.PROPEN_02891 | + | ||||
| 471881.PROPEN_01197 | + | ||||
| 471881.PROPEN_01669 | + | ||||
| 471881.PROPEN_01844 | (PF00384) | ||||
| 471881.PROPEN_01845 | (PF00384) | ||||
| 471881.PROPEN_04253 | (PF00224) | ||||
| 471881.PROPEN_04254 | (PF02275) | ||||
| 471881.PROPEN_04256 | + | ||||
| 471881.PROPEN_04786 | + | ||||
| 471881.PROPEN_00486 | + | ||||
| 471881.PROPEN_04470 | (PF09330) | ||||
| 471881.PROPEN_04462 | + | ||||
| 471881.PROPEN_03709 | + | ||||
| 471881.PROPEN_04701 | (PF01268) | ||||
| 471881.PROPEN_02543 | + | ||||
| 471881.PROPEN_01653 | + | ||||
| 471881.PROPEN_01306 | + | ||||
| 471881.PROPEN_01303 | PF13332 | ||||
| 471881.PROPEN_01947 | PF00577 | ||||
| 471881.PROPEN_01946 | PF00577 | not used | |||
| 471881.PROPEN_01944 | PF00577 | ||||
| 471881.PROPEN_01548 | + | ||||
| 471881.PROPEN_04042 | + | ||||
| 471881.PROPEN_00498 | (PF01715) | ||||
| 471881.PROPEN_00499 | (PF01715) | ||||
| 471881.PROPEN_03832 | + | ||||
| 471881.PROPEN_03542 | + | ||||
| 471881.PROPEN_04401 | + | ||||
| 471881.PROPEN_02946 | PF02551 | ||||
| 471881.PROPEN_02947 | PF02551 | ||||
| 471881.PROPEN_02231 | (PF01795) | ||||
| 471881.PROPEN_02232 | (PF01795) | ||||
| 471881.PROPEN_04055 | (PF02275) | ||||
| 471881.PROPEN_00151 | + | ||||
| 471881.PROPEN_00971 | (PF05524) | ||||
| 471881.PROPEN_00979 | (PF00136) | ||||
| 471881.PROPEN_00378 | (PF00345) | ||||
| 471881.PROPEN_04697 | (PF03313) | ||||
| 471881.PROPEN_00937 | + | ||||
| 471881.PROPEN_01222 | + | ||||
| 471881.PROPEN_03089 | + | ||||
| 471881.PROPEN_03080 | (PF01053) | ||||
| 471881.PROPEN_00547 | + | ||||
| 471881.PROPEN_04570 | + | ||||
| 471881.PROPEN_00656 | + | ||||
| 471881.PROPEN_02937 | + | ||||
| 471881.PROPEN_02930 | + | ||||
| 471881.PROPEN_03337 | (PF00384) | ||||
| 471881.PROPEN_03334 | (PF10014) | ||||
| 471881.PROPEN_02209 | PF13332 | ||||
| 471881.PROPEN_03339 | (PF00384) | ||||
| 471881.PROPEN_04822 | + | ||||
| 471881.PROPEN_00816 | (PF00384) | ||||
| 471881.PROPEN_00814 | (PF00384) | ||||
| 471881.PROPEN_00815 | (PF00384) | ||||
| 471881.PROPEN_04201 | + | ||||
| 471881.PROPEN_01962 | + | ||||
| 471881.PROPEN_04666 | + | ||||
| 471881.PROPEN_00217 | (PF12255) | ||||
| 471881.PROPEN_04054 | + | ||||
| 471881.PROPEN_04730 | (PF00345) | ||||
| 471881.PROPEN_03185 | + | ||||
| 471881.PROPEN_02699 | (PF02622) | not used | |||
| 471881.PROPEN_03851 | (PF00345) | ||||
| 471881.PROPEN_02855 | (PF03738) | ||||
| 471881.PROPEN_00370 | + | ||||
| 471881.PROPEN_01158 | + | ||||
| 471881.PROPEN_01021 | + | ||||
| 471881.PROPEN_01022 | (PF03738) | ||||
| 471881.PROPEN_01023 | (PF03738) | ||||
| 471881.PROPEN_00688 | + | ||||
| 471881.PROPEN_02303 | + | ||||
| 471881.PROPEN_00422 | PF00577 | ||||
| 471881.PROPEN_00227 | + | ||||
| 471881.PROPEN_01846 | + | ||||
| 471881.PROPEN_04720 | PF00577 | ||||
| 471881.PROPEN_04723 | (PF00345) | ||||
| 471881.PROPEN_03749 | (PF01195) | not used |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.75 (14/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 1.75 (14/8 KEGG proteins)
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- +43 1 4277 876681
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