Effective results for Kytococcus sedentarius DSM 20547 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 47 proteins (24 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
478801.Ksed_25750				(PF03596)	(ER)
478801.Ksed_25690				(PF03596)	(ER)
478801.Ksed_22760				(PF13653)	mitochondrial; (mitochondrial)
478801.Ksed_03860				PF05887	(mitochondrial)
478801.Ksed_23490				PF01610	(plastid)
478801.Ksed_22400				PF01610	(plastid)
478801.Ksed_05360				PF01610	(plastid)
478801.Ksed_22860				(PF06032)
478801.Ksed_22680				PF01610
478801.Ksed_24220				(PF00872)
478801.Ksed_22870				(PF06032)
478801.Ksed_24420				PF08213	not used
478801.Ksed_21460				PF01610
478801.Ksed_23600				PF01610
478801.Ksed_25600				PF01610
478801.Ksed_20340				PF00910
478801.Ksed_06560				(PF00872)
478801.Ksed_05430				(PF00872)
478801.Ksed_06980				PF01610
478801.Ksed_17950				(PF00872)
478801.Ksed_15140				PF01610
478801.Ksed_18020				(PF00872)
478801.Ksed_14440				(PF00872)
478801.Ksed_23480				PF01610
478801.Ksed_06390				(PF00872)
478801.Ksed_19270				(PF16983)
478801.Ksed_22340				(PF00872)
478801.Ksed_02150				PF01610
478801.Ksed_06410				PF01610
478801.Ksed_00630				PF00018
478801.Ksed_23830				PF01610
478801.Ksed_01800				(PF00872)
478801.Ksed_22880				(PF06032)
478801.Ksed_17110				PF01610
478801.Ksed_02160				PF01610
478801.Ksed_21140				PF01610
478801.Ksed_00500				(PF08392)
478801.Ksed_25830				(PF00872)
478801.Ksed_09270				(PF00872)
478801.Ksed_00660				(PF00872)
478801.Ksed_22840				PF01610
478801.Ksed_25640				PF01610
478801.Ksed_17620				(PF00872)
478801.Ksed_24200				PF01610
478801.Ksed_04880				PF01610
478801.Ksed_25910				(PF00872)
478801.Ksed_20190				(PF00872)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================