Effective results for Sphaerobacter thermophilus DSM 20745 (eggnog40)

Summary

Number of putative secreted proteins: 76
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 76 proteins (3 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
479434.Sthe_2303				(PF02012)	ER
479434.Sthe_2938				(PF01609)	ER; (ER)
479434.Sthe_2454				(PF07646)	ER
479434.Sthe_0326				(PF00163)	(mitochondrial)
479434.Sthe_0350				(PF01609)	ER; (ER)
479434.Sthe_3102				(PF02628)	(mitochondrial)
479434.Sthe_2213				(PF01609)	ER; (ER)
479434.Sthe_2439				(PF01609)	ER; (ER)
479434.Sthe_0010				(PF01609)	ER; (ER)
479434.Sthe_3117				(PF15902)	(ER)
479434.Sthe_2779				(PF01609)	ER; (ER)
479434.Sthe_1779				(PF11028)	ER
479434.Sthe_2762				(PF13579)	(mitochondrial)
479434.Sthe_0055				(PF01609)	ER; (ER)
479434.Sthe_2571				(PF01609)	ER; (ER)
479434.Sthe_1133				(PF14099)	ER
479434.Sthe_1132				(PF13579)	ER
479434.Sthe_1131				(PF14099)	ER
479434.Sthe_3168				(PF02628)	ER
479434.Sthe_2360				(PF12483)	ER
479434.Sthe_1724				(PF01609)	ER; (ER)
479434.Sthe_0274				(PF02538)	(ER)
479434.Sthe_3211				(PF01609)	ER; (ER)
479434.Sthe_3177				(PF01609)	ER; (ER)
479434.Sthe_3193				(PF02628)	(mitochondrial)
479434.Sthe_0868				PF11601	ER
479434.Sthe_2826				(PF01609)	ER; (ER)
479434.Sthe_0475				(PF01609)	ER; (ER)
479434.Sthe_1267				(PF08031)	(mitochondrial)
479434.Sthe_2250				(PF01609)	ER; (ER)
479434.Sthe_2784				(PF01609)	ER; (ER)
479434.Sthe_1063				(PF00163)	mitochondrial
479434.Sthe_0117				(PF01609)	ER; (ER)
479434.Sthe_1647				(PF08031)	(plastid)
479434.Sthe_1568				(PF00025)	(mitochondrial)
479434.Sthe_1742				(PF15902) (PF02012)
479434.Sthe_2890				(PF02538)	(ER)
479434.Sthe_2958				(PF02012)	(mitochondrial)
479434.Sthe_2757				(PF13579)	(ER)
479434.Sthe_1326				(PF13579)	(mitochondrial)
479434.Sthe_2276				(PF15902)
479434.Sthe_3498				(PF02538)
479434.Sthe_2871				(PF16952)
479434.Sthe_2427				(PF01609)
479434.Sthe_1358				(PF03576)
479434.Sthe_0354				(PF08031)
479434.Sthe_0009				(PF02538)
479434.Sthe_1748				(PF00643)
479434.Sthe_0160				(PF01609)
479434.Sthe_1570				(PF03069)
479434.Sthe_0808				(PF11028)
479434.Sthe_3449				(PF13579)
479434.Sthe_2525				(PF08031)
479434.Sthe_0634				(PF04343)
479434.Sthe_2891				(PF02538)
479434.Sthe_2894				(PF03069)
479434.Sthe_1706				(PF13579)
479434.Sthe_1129				(PF15902)
479434.Sthe_1955				(PF03576)
479434.Sthe_2579				(PF08031)
479434.Sthe_0849				(PF13579)
479434.Sthe_0663				(PF13579)
479434.Sthe_0061				(PF04343)
479434.Sthe_1828				(PF04343)
479434.Sthe_1827				(PF04343)
479434.Sthe_1850				(PF04423)
479434.Sthe_1024				PF03464
479434.Sthe_1275				(PF03576)
479434.Sthe_1273				(PF08031)
479434.Sthe_2331				PF10343
479434.Sthe_2482				(PF02538)
479434.Sthe_2487				(PF03069)
479434.Sthe_2468				(PF03069)
479434.Sthe_2668				(PF15902)
479434.Sthe_3035				(PF14330)
479434.Sthe_1070				(PF03576)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================