Metamenu

Effective results for Mycoplasma fermentans PG18 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
496833.MBIO_0193(PF04326)mitochondrial
496833.MBIO_0482(PF13173)(mitochondrial)
496833.MBIO_0152(PF13173)(ER)
496833.MBIO_0597(PF13173)ER
496833.MBIO_0631(PF13173)(mitochondrial)
496833.MBIO_0442(PF11074)(mitochondrial)
496833.MBIO_0477(PF04326)mitochondrial
496833.MBIO_0471(PF04193)ER
496833.MBIO_0594(PF13936)(mitochondrial)
496833.MBIO_0136(PF13936)
496833.MBIO_0593(PF13173)
496833.MBIO_0543(PF13936)
496833.MBIO_0264(PF04193)
496833.MBIO_0424(PF13173)
496833.MBIO_0854(PF04326)
496833.MBIO_0326(PF13173)
496833.MBIO_0630(PF13173)not used
496833.MBIO_0113(PF04326)
496833.MBIO_0160(PF13936)
496833.MBIO_0762(PF13936)
496833.MBIO_0710(PF13936)
496833.MBIO_0622(PF04326)not used
496833.MBIO_0005(PF13173)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================