Metamenu

Effective results for Stenotrophomonas maltophilia K279a (eggnog40)

Summary

Number of putative secreted proteins: 117
- Predicted by T4SEpre: 58
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 66 proteins (1 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
522373.Smlt0550(PF01431) (PF05649)ER
522373.Smlt3450(PF01431) (PF05649)ER
522373.Smlt1431(PF01431) (PF05649)ER
522373.Smlt3348(PF08212)ER
522373.Smlt0539+ER
522373.Smlt3936(PF04450)ER
522373.Smlt2876+ER
522373.Smlt2877+ER
522373.Smlt2417(PF13276)mitochondrial
522373.Smlt0835(PF13276)ER; (ER)
522373.Smlt0519(PF03203)ER
522373.Smlt3892(PF03544)ER
522373.Smlt4285(PF04505)ER
522373.Smlt1624+(ER)
522373.Smlt3093(PF03544)(mitochondrial); (plastid)
522373.Smlt2292(PF13276)ER; (ER)
522373.Smlt4469+ER
522373.Smlt1247(PF05684)ER
522373.Smlt3244(PF03544)ER
522373.Smlt4506(PF03544)ER; (ER)
522373.Smlt2631+mitochondrial
522373.Smlt2939(PF03544)(mitochondrial); mitochondrial
522373.Smlt4312+ER
522373.Smlt0772(PF11539)mitochondrial; (mitochondrial)
522373.Smlt2550+ER
522373.Smlt4432+(ER)
522373.Smlt3308+mitochondrial
522373.Smlt3545(PF13276)ER; (ER)
522373.Smlt4423+mitochondrial
522373.Smlt3229+(ER); (plastid)
522373.Smlt3484+ER
522373.Smlt2685(PF03203)mitochondrial; (plastid)
522373.Smlt4340(PF07653)mitochondrial
522373.Smlt0696+ER
522373.Smlt2367(PF08212)ER
522373.Smlt3809(PF03544)ER
522373.Smlt1426+ER
522373.Smlt2587+(mitochondrial)
522373.Smlt0808(PF13276)ER; (ER)
522373.Smlt0657(PF14307)plastid
522373.Smlt1447(PF03203)(mitochondrial)
522373.Smlt4452+plastid
522373.Smlt4286(PF04505)(ER)
522373.Smlt3477(PF03544)(mitochondrial)
522373.Smlt4086(PF08212)(plastid)
522373.Smlt3043(PF13276)(mitochondrial)
522373.Smlt0319+(plastid)
522373.Smlt0162(PF03544)(ER)
522373.Smlt0944+(mitochondrial)
522373.Smlt3447(PF01431) (PF05649)
522373.Smlt3565(PF05684)(ER)
522373.Smlt3299(PF04768)
522373.Smlt0493(PF13276)
522373.Smlt1039+
522373.Smlt2253(PF02371)
522373.Smlt1448PF17067not used
522373.Smlt0009(PF03544)
522373.Smlt4012+
522373.Smlt1571a+
522373.Smlt3473+
522373.Smlt1662(PF13276)
522373.Smlt1846(PF13276)
522373.Smlt0399+
522373.Smlt1329+
522373.Smlt1270+
522373.Smlt3655+
522373.Smlt2381+
522373.Smlt3938+
522373.Smlt3247+
522373.Smlt0026(PF13276)
522373.Smlt0021(PF03031)
522373.Smlt0518+
522373.Smlt2468(PF13910)
522373.Smlt4369+
522373.Smlt3094(PF03544)
522373.Smlt3676(PF03544)
522373.Smlt2478(PF13276)
522373.Smlt1817+
522373.Smlt2294+
522373.Smlt3083(PF13276)
522373.Smlt4613(PF05076)
522373.Smlt4502(PF08695)
522373.Smlt3878+
522373.Smlt2044+
522373.Smlt4267(PF03544)
522373.Smlt1733(PF02371)
522373.Smlt0560+
522373.Smlt0369(PF02371)
522373.Smlt4075+
522373.Smlt0558+
522373.Smlt2489(PF13276)
522373.Smlt3231+
522373.Smlt0883+
522373.Smlt2408(PF13276)
522373.Smlt1548+
522373.Smlt0622(PF14307)
522373.Smlt2328(PF02371)
522373.Smlt0949(PF05076)
522373.Smlt3778+
522373.Smlt1093(PF02371)
522373.Smlt4684(PF05076)
522373.Smlt4353(PF08212)
522373.Smlt0217+
522373.Smlt0040(PF05706)
522373.Smlt0465(PF02371)
522373.Smlt0467+
522373.Smlt0666(PF02371)
522373.Smlt0698(PF02371)
522373.Smlt2360+
522373.Smlt3584+
522373.Smlt1331+
522373.Smlt4360+
522373.Smlt3573(PF02371)
522373.Smlt2351(PF02371)
522373.Smlt2735(PF02371)
522373.Smlt3607+
522373.Smlt2643+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.4 (14/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================