Effective results for Acinetobacter sp. ATCC 27244 (eggnog40)
Summary
Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
525244.HMPREF0023_3279 | (PF05704) | ER | |||
525244.HMPREF0023_1902 | (PF10462) | ER | |||
525244.HMPREF0023_0620 | (PF14539) | (mitochondrial) | |||
525244.HMPREF0023_3024 | (PF13276) | mitochondrial; (mitochondrial) | |||
525244.HMPREF0023_1888 | (PF13582) | ER | |||
525244.HMPREF0023_1632 | (PF00413) | ER | |||
525244.HMPREF0023_2092 | (PF13276) | (plastid) | |||
525244.HMPREF0023_1346 | (PF14539) | (plastid) | |||
525244.HMPREF0023_3190 | (PF09588) | (plastid) | |||
525244.HMPREF0023_1685 | (PF14539) | (mitochondrial) | |||
525244.HMPREF0023_1634 | (PF00413) | (mitochondrial) | |||
525244.HMPREF0023_0235 | (PF11815) | (mitochondrial) | |||
525244.HMPREF0023_2446 | (PF13276) | ||||
525244.HMPREF0023_2989 | (PF13276) | ||||
525244.HMPREF0023_0011 | (PF09588) | ||||
525244.HMPREF0023_0709 | (PF13271) | ||||
525244.HMPREF0023_0526 | (PF13276) | ||||
525244.HMPREF0023_1131 | (PF13271) | ||||
525244.HMPREF0023_3210 | (PF13276) | not used | |||
525244.HMPREF0023_2100 | (PF13276) | ||||
525244.HMPREF0023_0079 | (PF09588) | ||||
525244.HMPREF0023_3207 | (PF13276) | ||||
525244.HMPREF0023_3206 | (PF13276) | not used | |||
525244.HMPREF0023_2317 | (PF13276) | ||||
525244.HMPREF0023_1633 | (PF00413) | ||||
525244.HMPREF0023_1328 | (PF14539) | ||||
525244.HMPREF0023_1744 | (PF13276) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.5 (4/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (4/8 KEGG proteins)