Effective results for Acinetobacter sp. ATCC 27244 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525244.HMPREF0023_3279(PF05704)ER
525244.HMPREF0023_1902(PF10462)ER
525244.HMPREF0023_0620(PF14539)(mitochondrial)
525244.HMPREF0023_3024(PF13276)mitochondrial; (mitochondrial)
525244.HMPREF0023_1888(PF13582)ER
525244.HMPREF0023_1632(PF00413)ER
525244.HMPREF0023_2092(PF13276)(plastid)
525244.HMPREF0023_1346(PF14539)(plastid)
525244.HMPREF0023_3190(PF09588)(plastid)
525244.HMPREF0023_1685(PF14539)(mitochondrial)
525244.HMPREF0023_1634(PF00413)(mitochondrial)
525244.HMPREF0023_0235(PF11815)(mitochondrial)
525244.HMPREF0023_2446(PF13276)
525244.HMPREF0023_2989(PF13276)
525244.HMPREF0023_0011(PF09588)
525244.HMPREF0023_0709(PF13271)
525244.HMPREF0023_0526(PF13276)
525244.HMPREF0023_1131(PF13271)
525244.HMPREF0023_3210(PF13276)not used
525244.HMPREF0023_2100(PF13276)
525244.HMPREF0023_0079(PF09588)
525244.HMPREF0023_3207(PF13276)
525244.HMPREF0023_3206(PF13276)not used
525244.HMPREF0023_2317(PF13276)
525244.HMPREF0023_1633(PF00413)
525244.HMPREF0023_1328(PF14539)
525244.HMPREF0023_1744(PF13276)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================