Metamenu

Effective results for Lactobacillus ultunensis DSM 16047 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 49 proteins (6 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525365.HMPREF0548_0285(PF16875) (PF16874) (PF02065)
525365.HMPREF0548_1089(PF16875) (PF16874) (PF02065)
525365.HMPREF0548_1760(PF05014)mitochondrial
525365.HMPREF0548_1513(PF03577)(mitochondrial)
525365.HMPREF0548_2013(PF16875) (PF16874) (PF02065)
525365.HMPREF0548_1607(PF05704)ER
525365.HMPREF0548_1203(PF16193) (PF12002)
525365.HMPREF0548_0248(PF05014)(mitochondrial)
525365.HMPREF0548_0308(PF16874) (PF02065)
525365.HMPREF0548_0307(PF16875) (PF02065)
525365.HMPREF0548_0056(PF16193) (PF12002)
525365.HMPREF0548_0510PF00910(mitochondrial)
525365.HMPREF0548_0184(PF16193) (PF12002)
525365.HMPREF0548_1544(PF01637)
525365.HMPREF0548_0099(PF00690)
525365.HMPREF0548_0556(PF00690)
525365.HMPREF0548_1952(PF00690)
525365.HMPREF0548_1040(PF06838)
525365.HMPREF0548_0954PF03051
525365.HMPREF0548_0953PF03051
525365.HMPREF0548_0541(PF01637)
525365.HMPREF0548_1978(PF03577)
525365.HMPREF0548_1085(PF13350)
525365.HMPREF0548_0581(PF06100)
525365.HMPREF0548_0580(PF06100)
525365.HMPREF0548_1518(PF13350)
525365.HMPREF0548_2089PF03051
525365.HMPREF0548_2087(PF00690)
525365.HMPREF0548_1836(PF00173)
525365.HMPREF0548_1834(PF01501)
525365.HMPREF0548_1832(PF01501)
525365.HMPREF0548_1833(PF01501)
525365.HMPREF0548_1684(PF03577)
525365.HMPREF0548_1758(PF13350)
525365.HMPREF0548_1696(PF05014)
525365.HMPREF0548_1325(PF00173)
525365.HMPREF0548_1254(PF13350)
525365.HMPREF0548_0319(PF06838)
525365.HMPREF0548_0441(PF01637)
525365.HMPREF0548_0689(PF00690)
525365.HMPREF0548_0686(PF06100)
525365.HMPREF0548_1906PF03051
525365.HMPREF0548_1475(PF13350)
525365.HMPREF0548_1318(PF03577)
525365.HMPREF0548_0216(PF00690)
525365.HMPREF0548_1937(PF00690)
525365.HMPREF0548_1594(PF01637)
525365.HMPREF0548_0155(PF03577)
525365.HMPREF0548_1944PF03051

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================