Effective results for Lactobacillus vaginalis DSM 5837 = ATCC 49540 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525366.HMPREF0549_1844				(PF03577)	(mitochondrial); (plastid)
525366.HMPREF0549_0787				(PF00413)	ER
525366.HMPREF0549_1814				(PF00413)	ER
525366.HMPREF0549_1241				(PF02275)	(ER)
525366.HMPREF0549_1468				(PF00056)	(ER)
525366.HMPREF0549_0539				(PF03099) (PF10437)
525366.HMPREF0549_0411				(PF03099) (PF10437)
525366.HMPREF0549_1200				(PF03099) (PF10437)
525366.HMPREF0549_0463				(PF03099) (PF10437)
525366.HMPREF0549_0308				(PF00056)
525366.HMPREF0549_0300				(PF00173)
525366.HMPREF0549_0058				(PF02275)
525366.HMPREF0549_1075				(PF00056)
525366.HMPREF0549_1106				(PF03577)
525366.HMPREF0549_1107				(PF03577)
525366.HMPREF0549_1102				(PF00173)
525366.HMPREF0549_1289				(PF00958)
525366.HMPREF0549_1059				(PF03099)	not used
525366.HMPREF0549_1300				(PF00413)
525366.HMPREF0549_0172				(PF03577)
525366.HMPREF0549_1417				PF00380
525366.HMPREF0549_1418				PF00380	not used
525366.HMPREF0549_1625				(PF00056)
525366.HMPREF0549_0562				(PF00958)	not used
525366.HMPREF0549_1186				(PF03577)
525366.HMPREF0549_1239				(PF03577)
525366.HMPREF0549_0338				(PF02275)
525366.HMPREF0549_0061				(PF03099)
525366.HMPREF0549_0323				(PF00056)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================