Metamenu

Effective results for Brachyspira murdochii DSM 12563 (eggnog40)

Summary

Number of putative secreted proteins: 161
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 161 proteins (70 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
526224.Bmur_0229PF00023 PF13857 (PF13637) PF12796ER
526224.Bmur_2080PF00023 (PF13637) PF12796ER
526224.Bmur_2674(PF13181) (PF07719) (PF07720)ER
526224.Bmur_1348PF13606 PF12796ER
526224.Bmur_1347PF13606 PF12796ER
526224.Bmur_0301PF13606 PF12796ER
526224.Bmur_0232PF13857 PF12796ER
526224.Bmur_2632(PF13637) PF12796ER
526224.Bmur_2681PF13606 PF12796ER
526224.Bmur_2699(PF13637) PF12796ER
526224.Bmur_1983PF13606 PF12796ER
526224.Bmur_0475(PF13637) PF12796ER
526224.Bmur_1453PF13857 PF12796ER
526224.Bmur_2701PF13857 PF12796ER
526224.Bmur_2700PF00023 PF12796ER
526224.Bmur_2066PF13857 PF12796ER
526224.Bmur_2481PF12796ER
526224.Bmur_1825(PF05935)ER
526224.Bmur_1778(PF13174)ER
526224.Bmur_0428PF12796ER
526224.Bmur_0948PF12796ER
526224.Bmur_1362(PF13181) (PF07719) (PF00515)
526224.Bmur_0893(PF13181)ER
526224.Bmur_2318PF12796ER
526224.Bmur_0099PF12796ER
526224.Bmur_0150(PF01442)ER
526224.Bmur_1798(PF13181) (PF07719) (PF00515)
526224.Bmur_2761(PF13181)ER
526224.Bmur_2166(PF13304)(mitochondrial)
526224.Bmur_0188(PF03724)ER
526224.Bmur_0219PF12796ER
526224.Bmur_2208PF12796ER
526224.Bmur_2209(PF03724)ER
526224.Bmur_0454PF12796ER
526224.Bmur_2756(PF05154)ER
526224.Bmur_2373PF12796ER
526224.Bmur_2198PF12796ER
526224.Bmur_1530(PF13304)(mitochondrial)
526224.Bmur_2746(PF05154)ER
526224.Bmur_2360(PF13174)ER
526224.Bmur_0474PF12796ER
526224.Bmur_0471PF12796ER
526224.Bmur_2735(PF07719)ER
526224.Bmur_0806(PF13174)ER
526224.Bmur_1603(PF13181) (PF07719) (PF00515)
526224.Bmur_0481(PF07510)ER
526224.Bmur_2436(PF03724)ER
526224.Bmur_1450PF12796ER
526224.Bmur_0072PF12796ER
526224.Bmur_2437(PF03724)ER
526224.Bmur_1445(PF13181)ER
526224.Bmur_0828(PF05154)ER
526224.Bmur_2098(PF13637)ER
526224.Bmur_2418(PF12895)ER
526224.Bmur_0523(PF13181)mitochondrial; (mitochondrial)
526224.Bmur_1463PF12796ER
526224.Bmur_1462(PF05935)ER
526224.Bmur_0020(PF13181)ER
526224.Bmur_1395PF12796ER
526224.Bmur_2441(PF13181) (PF07719) (PF00515)
526224.Bmur_2447(PF12895)(ER)
526224.Bmur_1804PF12796ER
526224.Bmur_0754PF12796ER
526224.Bmur_2054(PF13181) (PF00515)
526224.Bmur_1342(PF13181) (PF00515)
526224.Bmur_2322(PF00515)(plastid)
526224.Bmur_1641(PF13181) (PF12895)
526224.Bmur_1353(PF07510) (PF03235)
526224.Bmur_2321(PF13181) (PF00515)
526224.Bmur_2035(PF13181) (PF00515)
526224.Bmur_0941PF03382(ER)
526224.Bmur_0163(PF13181) (PF00515)
526224.Bmur_1140(PF13181) (PF12895)
526224.Bmur_0097(PF13181) (PF13174)
526224.Bmur_1891(PF13175)(mitochondrial)
526224.Bmur_0982(PF07510) (PF03235)
526224.Bmur_0142(PF07510) (PF03235)
526224.Bmur_2374(PF13637)mitochondrial; not used
526224.Bmur_2370(PF13181) (PF00515)
526224.Bmur_1317(PF13589)(mitochondrial)
526224.Bmur_1982PF13606 PF12796
526224.Bmur_1701(PF13589)(mitochondrial)
526224.Bmur_0395PF00023 PF12796
526224.Bmur_0622PF00023 PF12796
526224.Bmur_1653(PF13181) (PF00515)
526224.Bmur_0354(PF13181) (PF00515)
526224.Bmur_2277(PF13589)(mitochondrial)
526224.Bmur_1741(PF09511)(mitochondrial)
526224.Bmur_2444(PF07510) (PF03235)
526224.Bmur_0192(PF13181) (PF00515)
526224.Bmur_0578(PF13175)
526224.Bmur_2057(PF13304)
526224.Bmur_2634(PF13181)
526224.Bmur_1345(PF13181)
526224.Bmur_2320(PF00515)
526224.Bmur_1569(PF13304)
526224.Bmur_0418PF12796
526224.Bmur_2338(PF13589)
526224.Bmur_1352(PF03235)
526224.Bmur_0770(PF01195)
526224.Bmur_0771(PF01195)
526224.Bmur_0226(PF13589)
526224.Bmur_0555(PF16314)
526224.Bmur_0942PF03382
526224.Bmur_0760(PF03724)
526224.Bmur_0944PF03382
526224.Bmur_0898(PF13181)
526224.Bmur_1781(PF13175)
526224.Bmur_2790PF03382
526224.Bmur_0091PF05794
526224.Bmur_0936PF12796
526224.Bmur_2789PF03382
526224.Bmur_2788PF03382
526224.Bmur_2784PF03382
526224.Bmur_2787PF03382
526224.Bmur_2786PF03382
526224.Bmur_2780(PF07719)
526224.Bmur_2783PF03382
526224.Bmur_1414(PF00182)
526224.Bmur_2205PF12796
526224.Bmur_2689(PF13174)
526224.Bmur_0040PF03382
526224.Bmur_1538(PF13175)
526224.Bmur_2740(PF13181)
526224.Bmur_0699PF01501
526224.Bmur_2422(PF13175)
526224.Bmur_1425PF11443
526224.Bmur_2348(PF13175)
526224.Bmur_2236PF00023
526224.Bmur_1295(PF00182)
526224.Bmur_1457(PF13304)
526224.Bmur_0073(PF06241)
526224.Bmur_0815PF03382
526224.Bmur_0814PF03382
526224.Bmur_1679(PF00182)
526224.Bmur_0654(PF13181)
526224.Bmur_2397(PF05154)
526224.Bmur_1281(PF13181)
526224.Bmur_1067(PF13181)
526224.Bmur_0005PF12796
526224.Bmur_0718PF03382
526224.Bmur_2523(PF13304)
526224.Bmur_2411PF12796
526224.Bmur_2410PF12796
526224.Bmur_2255(PF00182)
526224.Bmur_0016(PF13181)
526224.Bmur_0943PF03382
526224.Bmur_0702PF01501
526224.Bmur_0700PF01501
526224.Bmur_0705PF01501
526224.Bmur_0704PF01501
526224.Bmur_1261(PF13174)
526224.Bmur_1464PF12796
526224.Bmur_0605(PF13181)
526224.Bmur_2611(PF13304)
526224.Bmur_2101PF01501
526224.Bmur_2104PF01501
526224.Bmur_1745(PF13304)
526224.Bmur_0506(PF00515)
526224.Bmur_2442PF03382
526224.Bmur_0999PF12796

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================