Effective results for Neisseria elongata subsp. glycolytica ATCC 29315 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 47 proteins (0 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
546263.NEIELOOT_00633				(PF03083)	(ER); (mitochondrial)
546263.NEIELOOT_00501				(PF12762)	(mitochondrial)
546263.NEIELOOT_02698				(PF03162)	ER
546263.NEIELOOT_02585				(PF13429)	ER
546263.NEIELOOT_01737				(PF00344)	ER
546263.NEIELOOT_02534				(PF12762)	ER; (ER)
546263.NEIELOOT_03020				(PF05598)	(plastid)
546263.NEIELOOT_00934				(PF01755)	(mitochondrial)
546263.NEIELOOT_02897				(PF09511)	(mitochondrial)
546263.NEIELOOT_02681				(PF05598)	(plastid)
546263.NEIELOOT_02904				(PF14413) (PF04446)
546263.NEIELOOT_00177				(PF05598)	(mitochondrial)
546263.NEIELOOT_03051				(PF01195)
546263.NEIELOOT_03050				(PF01195)
546263.NEIELOOT_03137				(PF05598)	not used
546263.NEIELOOT_02472				(PF05598)
546263.NEIELOOT_02473				(PF05598)
546263.NEIELOOT_00932				(PF01755)
546263.NEIELOOT_00931				(PF01755)	not used
546263.NEIELOOT_00869				(PF01885)
546263.NEIELOOT_00868				(PF01885)
546263.NEIELOOT_03067				(PF05598)
546263.NEIELOOT_01838				(PF05598)
546263.NEIELOOT_02324				(PF01795)
546263.NEIELOOT_02323				(PF01795)
546263.NEIELOOT_00209				(PF00562)
546263.NEIELOOT_00208				(PF00562)
546263.NEIELOOT_02133				(PF05697)	not used
546263.NEIELOOT_02132				(PF05697)
546263.NEIELOOT_00484				(PF05167)
546263.NEIELOOT_01112				(PF05167)
546263.NEIELOOT_01299				(PF12762)
546263.NEIELOOT_02752				(PF12762)
546263.NEIELOOT_02747				(PF05598)
546263.NEIELOOT_01736				(PF00344)
546263.NEIELOOT_02495				(PF13429)
546263.NEIELOOT_02382				(PF05598)
546263.NEIELOOT_02841				(PF04127)
546263.NEIELOOT_02840				(PF04127)
546263.NEIELOOT_03147				(PF05598)
546263.NEIELOOT_03145				(PF05598)
546263.NEIELOOT_02033				(PF05598)
546263.NEIELOOT_00385				(PF05598)
546263.NEIELOOT_02633				(PF05598)
546263.NEIELOOT_00775				(PF03083)
546263.NEIELOOT_01950				(PF05598)
546263.NEIELOOT_02280				(PF11969)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================