Metamenu

Effective results for Neisseria mucosa ATCC 25996 (eggnog40)

Summary

Number of putative secreted proteins: 118
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 118 proteins (35 high, 83 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546266.NEIMUCOT_05452(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_04886(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_05617(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_04090(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_05565(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_06677(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_06074(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_04277(PF13276) (PF00665)(mitochondrial)
546266.NEIMUCOT_06694(PF13518)mitochondrial
546266.NEIMUCOT_06696(PF12836)ER
546266.NEIMUCOT_06693(PF13276)(mitochondrial)
546266.NEIMUCOT_06595(PF00665)mitochondrial
546266.NEIMUCOT_06003(PF13518)mitochondrial
546266.NEIMUCOT_06014(PF00665)mitochondrial
546266.NEIMUCOT_06013(PF13518)mitochondrial
546266.NEIMUCOT_05596(PF13276)(mitochondrial)
546266.NEIMUCOT_05724(PF13430)(mitochondrial)
546266.NEIMUCOT_06532(PF13276)(mitochondrial)
546266.NEIMUCOT_06668(PF12836)ER
546266.NEIMUCOT_04039(PF00665)(mitochondrial)
546266.NEIMUCOT_06676(PF13518)mitochondrial
546266.NEIMUCOT_06675(PF12836)ER
546266.NEIMUCOT_05778(PF12836)ER
546266.NEIMUCOT_04647(PF00665)(mitochondrial)
546266.NEIMUCOT_06501(PF12836)ER
546266.NEIMUCOT_04663(PF00665)mitochondrial
546266.NEIMUCOT_04662(PF13518)mitochondrial
546266.NEIMUCOT_04789(PF00665)mitochondrial
546266.NEIMUCOT_06685(PF12836)ER
546266.NEIMUCOT_04506(PF05598)(plastid)
546266.NEIMUCOT_06145(PF05598)(plastid)
546266.NEIMUCOT_04554(PF05598)(plastid)
546266.NEIMUCOT_06672(PF05598)(plastid)
546266.NEIMUCOT_06181PF13613 PF13359
546266.NEIMUCOT_06128(PF05598)(plastid)
546266.NEIMUCOT_05640(PF00665)
546266.NEIMUCOT_05641(PF13358)
546266.NEIMUCOT_05264(PF00665)
546266.NEIMUCOT_05862(PF13358)
546266.NEIMUCOT_06594(PF13518)not used
546266.NEIMUCOT_06592(PF05598)
546266.NEIMUCOT_06172PF13359not used
546266.NEIMUCOT_05853(PF00665)not used
546266.NEIMUCOT_04505(PF05593)
546266.NEIMUCOT_04502(PF05593)not used
546266.NEIMUCOT_04501(PF00665)not used
546266.NEIMUCOT_05927PF13359
546266.NEIMUCOT_05928PF13613not used
546266.NEIMUCOT_06166(PF13358)
546266.NEIMUCOT_03843(PF05598)
546266.NEIMUCOT_05595(PF13358)
546266.NEIMUCOT_06379PF13359
546266.NEIMUCOT_06629PF13359
546266.NEIMUCOT_04896PF13613
546266.NEIMUCOT_04897PF13359
546266.NEIMUCOT_04890(PF00665)not used
546266.NEIMUCOT_04892(PF13358)
546266.NEIMUCOT_04412(PF13358)
546266.NEIMUCOT_06492(PF00665)not used
546266.NEIMUCOT_06146(PF13358)
546266.NEIMUCOT_06380PF13613
546266.NEIMUCOT_05559(PF05593)
546266.NEIMUCOT_06554(PF00665)
546266.NEIMUCOT_04768(PF00755)
546266.NEIMUCOT_05711(PF12836)
546266.NEIMUCOT_05725(PF13430)
546266.NEIMUCOT_06531(PF00665)not used
546266.NEIMUCOT_04960(PF13358)
546266.NEIMUCOT_05185(PF13358)
546266.NEIMUCOT_06456(PF05593)
546266.NEIMUCOT_06453(PF05593)
546266.NEIMUCOT_06678PF13359
546266.NEIMUCOT_06679PF13613
546266.NEIMUCOT_03825PF13359not used
546266.NEIMUCOT_06510PF13613
546266.NEIMUCOT_06468(PF05593)
546266.NEIMUCOT_06461(PF05593)
546266.NEIMUCOT_06465(PF05593)
546266.NEIMUCOT_04645PF13613
546266.NEIMUCOT_04646PF13359
546266.NEIMUCOT_06643(PF00665)
546266.NEIMUCOT_06640(PF00665)not used
546266.NEIMUCOT_05349(PF05598)
546266.NEIMUCOT_05524(PF05593)
546266.NEIMUCOT_06509PF13359
546266.NEIMUCOT_06506PF13613
546266.NEIMUCOT_06507PF13359
546266.NEIMUCOT_06470(PF13358)
546266.NEIMUCOT_06254PF13359
546266.NEIMUCOT_06255PF13613
546266.NEIMUCOT_06252PF13359
546266.NEIMUCOT_03689(PF11969)
546266.NEIMUCOT_06630(PF13358)not used
546266.NEIMUCOT_05351PF13359
546266.NEIMUCOT_05352PF13613
546266.NEIMUCOT_04060(PF13358)
546266.NEIMUCOT_04067(PF13358)
546266.NEIMUCOT_04664(PF05598)
546266.NEIMUCOT_06405PF13613
546266.NEIMUCOT_06406PF13359
546266.NEIMUCOT_06312(PF13358)
546266.NEIMUCOT_03946(PF00665)
546266.NEIMUCOT_04830PF10712
546266.NEIMUCOT_04077PF13613
546266.NEIMUCOT_03572PF13359
546266.NEIMUCOT_03571PF13613
546266.NEIMUCOT_05026PF13359not used
546266.NEIMUCOT_05027(PF00665)not used
546266.NEIMUCOT_04316PF13613
546266.NEIMUCOT_04315PF13359
546266.NEIMUCOT_04261(PF05598)
546266.NEIMUCOT_06332PF13359
546266.NEIMUCOT_06331PF13613
546266.NEIMUCOT_06688(PF13358)
546266.NEIMUCOT_06206(PF05598)
546266.NEIMUCOT_06118(PF13358)
546266.NEIMUCOT_05305(PF13358)
546266.NEIMUCOT_06431PF13359

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================