Effective results for Neisseria polysaccharea ATCC 43768 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 19 proteins (5 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546267.NEIPOLOT_01600PF08333(mitochondrial)
546267.NEIPOLOT_02610(PF00562)mitochondrial
546267.NEIPOLOT_01789(PF12762)ER; (ER)
546267.NEIPOLOT_02214PF08333(mitochondrial)
546267.NEIPOLOT_01790(PF12762)(ER)
546267.NEIPOLOT_01788(PF12762)(mitochondrial)
546267.NEIPOLOT_01693(PF12762)(mitochondrial)
546267.NEIPOLOT_00137(PF07650)(mitochondrial)
546267.NEIPOLOT_01542PF02994
546267.NEIPOLOT_00654(PF12762)
546267.NEIPOLOT_01299PF08333
546267.NEIPOLOT_02217PF08333not used
546267.NEIPOLOT_02113(PF11969)
546267.NEIPOLOT_01823(PF12762)
546267.NEIPOLOT_02433(PF07650)
546267.NEIPOLOT_00022(PF05000)
546267.NEIPOLOT_02196(PF07650)
546267.NEIPOLOT_02611(PF00562)
546267.NEIPOLOT_02607(PF05000)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================