Effective results for Zymomonas mobilis subsp. mobilis ATCC 10988 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 31 proteins (0 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
555217.Zmob_0399				(PF10435) (PF13363)	ER
555217.Zmob_1221				(PF08238)	ER
555217.Zmob_0693				(PF08238)	ER
555217.Zmob_0692				(PF08238)	ER
555217.Zmob_0697				(PF08238)	ER
555217.Zmob_0696				(PF08238)	ER
555217.Zmob_0695				(PF08238)	ER
555217.Zmob_0694				(PF08238)	ER
555217.Zmob_0699				(PF08238)	ER
555217.Zmob_0698				(PF08238)	(ER); plastid
555217.Zmob_0774				(PF08238)	ER; (mitochondrial)
555217.Zmob_0777				(PF08238)	ER
555217.Zmob_0762				(PF08238)	ER
555217.Zmob_0752				(PF08238)	ER
555217.Zmob_1339				(PF01609)
555217.Zmob_0780				(PF01609)
555217.Zmob_1224				(PF01609)
555217.Zmob_1255				(PF01609)
555217.Zmob_1101				(PF01609)
555217.Zmob_1248				(PF01609)
555217.Zmob_0197				(PF01609)
555217.Zmob_0624				(PF01609)
555217.Zmob_1462				(PF01609)
555217.Zmob_0082				(PF01609)
555217.Zmob_0099				(PF01609)
555217.Zmob_1444				(PF01609)
555217.Zmob_1175				(PF01609)
555217.Zmob_0827				(PF01609)
555217.Zmob_1411				(PF01609)
555217.Zmob_0904				(PF01609)
555217.Zmob_1573				(PF01609)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================